View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10174_high_20 (Length: 266)

Name: NF10174_high_20
Description: NF10174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10174_high_20
NF10174_high_20
[»] chr4 (2 HSPs)
chr4 (17-252)||(6672028-6672263)
chr4 (100-152)||(6624983-6625035)


Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 17 - 252
Target Start/End: Complemental strand, 6672263 - 6672028
Alignment:
Q  17 ttgccatttattcgtagctattaagtaatccaagaatcaatttagagtaatatatgagtcactagttagtctacaaactaacatgcatgttctgatatag 116  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6672263 ttgccatttattcgtagctattaattaatccaagaatcaatttagagtaatatatgagtcactagttagtctacaaactcacatgcatgttctgatatag 6672164  T
Q  117 gtagttgtgaaataatagaggaataacattaagcctaaaaattttccaccactatataaacaatccgaccagatgtgaacttacaccctctccaccaaat 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6672163 gtagttgtgaaataatagaggaataacattaagcctaaaaattttccaccactatataaacaatccgaccagatgtgaacttacaccctctccaccaaat 6672064  T
Q  217 ctctccccatctttctcttcaacatggcattgtttc 252  Q
    ||||||||||||||||||||||||||||||||||||    
T  6672063 ctctccccatctttctcttcaacatggcattgtttc 6672028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 152
Target Start/End: Original strand, 6624983 - 6625035
Alignment:
Q  100 tgcatgttctgatataggtagttgtgaaataatagaggaataacattaagcct 152  Q
    ||||||||||||||||  |||||||||| ||| |||||||||| |||||||||    
T  6624983 tgcatgttctgatataactagttgtgaagtaaaagaggaataatattaagcct 6625035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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