View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10174_high_3 (Length: 461)
Name: NF10174_high_3
Description: NF10174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10174_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 177; Significance: 3e-95; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 142 - 451
Target Start/End: Original strand, 32994370 - 32994674
Alignment:
| Q |
142 |
ttttggaattttgataatgtaggggactaggttgatacaaccctgcaatttcaagtacaaacttgagtatttcctcttctaagaatatcaatgtcatttt |
241 |
Q |
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| T |
32994370 |
ttttagaatattaataatgaaggggattaggtcgatacaaccctacaatttcaagcacaaacttgattattacctctt-------tagtaacatcatttt |
32994462 |
T |
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| Q |
242 |
cataaaataaatgcttcaaatggga---aataatattaacatagctatagcaaattaacaatttgttactaaagatgatgctttttgacagagacttttc |
338 |
Q |
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| T |
32994463 |
cataaaatttaagtttcaaatgggagaaaaaaatattaacatagttatagcaaattaacaact-gttactaaagatgatgctttttgacagagacttttc |
32994561 |
T |
|
| Q |
339 |
acatgtgaccaatatgctcataaggttgccctatcaaatatgcaatggagggagaaattgccaagattacataccagatatttatcatcacgtaatattc |
438 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32994562 |
acatgtgaccaatatgctgataaggttgccctatcaaatatgcaatggagggagaaattgccaagattacataccagatatttatcatcacgtaatattc |
32994661 |
T |
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| Q |
439 |
catgtcacctttg |
451 |
Q |
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| T |
32994662 |
catgtcacctttg |
32994674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 32994040 - 32994115
Alignment:
| Q |
18 |
attcagtgcctcacacaagttagtgctattacttgcataaattcacttatatgcataactatatgttatctcatta |
93 |
Q |
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| T |
32994040 |
attcagtgcctcacacaagttagtgctattacttgcataaattcacttatatgcacaattatatgttatatcatta |
32994115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 153 - 206
Target Start/End: Complemental strand, 34620535 - 34620482
Alignment:
| Q |
153 |
tgataatgtaggggactaggttgatacaaccctgcaatttcaagtacaaacttg |
206 |
Q |
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| T |
34620535 |
tgatgatgtaggggactaggttgatataaccctacaatttcaaggactaacttg |
34620482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 153 - 206
Target Start/End: Complemental strand, 34747972 - 34747919
Alignment:
| Q |
153 |
tgataatgtaggggactaggttgatacaaccctgcaatttcaagtacaaacttg |
206 |
Q |
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| T |
34747972 |
tgatgatgtaggggactaggttgatataaccctacaatttcaaggactaacttg |
34747919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 213
Target Start/End: Complemental strand, 34592399 - 34592339
Alignment:
| Q |
153 |
tgataatgtaggggactaggttgatacaaccctgcaatttcaagtacaaacttgagtattt |
213 |
Q |
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|||||||||||||||||||||||||| | |||| |||||||||| | |||||| |||||| |
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| T |
34592399 |
tgataatgtaggggactaggttgatatagccctacaatttcaaggagtaacttgggtattt |
34592339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 213
Target Start/End: Original strand, 5854652 - 5854723
Alignment:
| Q |
142 |
ttttggaattttgataatgtaggggactaggttgatacaaccctgcaatttcaagtacaaacttgagtattt |
213 |
Q |
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| T |
5854652 |
ttttagaatattgataatgtaagggactaggttgttacaatcctacaacttcaaggaccaacttgagaattt |
5854723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 206
Target Start/End: Original strand, 5361297 - 5361351
Alignment:
| Q |
152 |
ttgataatgtaggggactaggttgatacaaccctgcaatttcaagtacaaacttg |
206 |
Q |
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| T |
5361297 |
ttgataatgtaggggactaaattgatacattcctacaatttcaattacaaacttg |
5361351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 203
Target Start/End: Original strand, 9078475 - 9078531
Alignment:
| Q |
147 |
gaattttgataatgtaggggactaggttgatacaaccctgcaatttcaagtacaaac |
203 |
Q |
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|||| |||||||||| | ||||||||||||||||||| | ||||||||||| |||| |
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| T |
9078475 |
gaatattgataatgtggaggactaggttgatacaaccatagaatttcaagtataaac |
9078531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 195
Target Start/End: Complemental strand, 37578190 - 37578158
Alignment:
| Q |
163 |
ggggactaggttgatacaaccctgcaatttcaa |
195 |
Q |
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| T |
37578190 |
ggggactaggttgatacaaccctacaatttcaa |
37578158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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