View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10174_high_34 (Length: 239)
Name: NF10174_high_34
Description: NF10174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10174_high_34 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 42015439 - 42015219
Alignment:
| Q |
1 |
tttggacagctcaataagctagctagcttttaaacccatataactnnnnnnngactcgtttggtgaccatcattttctaacaagctaatggtttattttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42015439 |
tttggacagctcaataagctagctagcttttaaactcatataactaaaaaaagactcgtttggtgaccatcattttctaacaagctaatggtttattttt |
42015340 |
T |
|
| Q |
101 |
attagcttatagcggttttcgataagctacttcaaagtagctttatagtttgatataaatcatcatttttagctttattatcttaatgaaaaaagaaaat |
200 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42015339 |
attagcttatagcggtttacgataagctacttcaa-gtagctttatagtttgatataaatcatcatttttagctttattatcttaatgaaaaaagaaaat |
42015241 |
T |
|
| Q |
201 |
caaatattaattaaacttatat |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
42015240 |
caaatattaattaaacttatat |
42015219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 144
Target Start/End: Complemental strand, 9198252 - 9198202
Alignment:
| Q |
93 |
ttatttttattagcttatagcggttttcgataagctacttcaaagtagcttt |
144 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||| ||| |||||||||| |
|
|
| T |
9198252 |
ttatttttactagcttatagcggtttttgataagctaattc-aagtagcttt |
9198202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 42139378 - 42139423
Alignment:
| Q |
74 |
tttctaacaagctaatggtttatttttattagcttatagcggtttt |
119 |
Q |
| |
|
||||| ||||||| || | ||||||||||||||||||||||||||| |
|
|
| T |
42139378 |
tttctcacaagcttatagcttatttttattagcttatagcggtttt |
42139423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 135
Target Start/End: Complemental strand, 12238650 - 12238598
Alignment:
| Q |
83 |
agctaatggtttatttttattagcttatagcggttttcgataagctacttcaa |
135 |
Q |
| |
|
|||| |||| ||||||| || || ||||||||||||||||||||||| ||||| |
|
|
| T |
12238650 |
agcttatggcttattttcatgagtttatagcggttttcgataagctaattcaa |
12238598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University