View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10174_high_35 (Length: 238)
Name: NF10174_high_35
Description: NF10174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10174_high_35 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 38833939 - 38833719
Alignment:
| Q |
16 |
aaaatgatcatgattatgttgacattagcataaacataaattgaccattagagaccaatatcaaaatgtcaagttttgataagatgaaaacatctcgttt |
115 |
Q |
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| T |
38833939 |
aaaatgatcatgattacgttgacattagcataaacataaattgaccattagagaccaaaatcaaaatggaaaattttgataagatgaaaacatctcgttt |
38833840 |
T |
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| Q |
116 |
ttatttttgggaattatgtatgatcaaaattcgctatatttttaagat--nnnnnnnnttatttcaccctatattatttacatatagaatgttatttaat |
213 |
Q |
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| T |
38833839 |
ttatttttgggaa----ctatgatcaaaattcgctatatttttaagataaaaaaaaaattatttcaccctatattatttacatatagaatgttatttaat |
38833744 |
T |
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| Q |
214 |
gactgagctgaatggttttactcac |
238 |
Q |
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||||||||||||||||||||||||| |
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| T |
38833743 |
gactgagctgaatggttttactcac |
38833719 |
T |
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