View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10174_high_5 (Length: 457)

Name: NF10174_high_5
Description: NF10174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10174_high_5
NF10174_high_5
[»] chr4 (3 HSPs)
chr4 (118-325)||(17360732-17360940)
chr4 (14-118)||(17360333-17360445)
chr4 (375-442)||(17363565-17363632)


Alignment Details
Target: chr4 (Bit Score: 177; Significance: 3e-95; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 118 - 325
Target Start/End: Original strand, 17360732 - 17360940
Alignment:
Q  118 tagaaattaataaccccccaaagcaagcataatatacccaaatcaaggacaaaagacatacactccactgcactaccattagtagggacaaaggggaaaa 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  17360732 tagaaattaataaccccccaaagcaagcataatatacccaaatcaaggacaaaagacatacactccactgcactaccattagtagggacaaagggg-aaa 17360830  T
Q  218 aacaccacccat---actaaaccaaaaaccaccgtaaacacatttttcaaacttttgtctatatgcattttttcactaatatagtctcaacatgttatgt 314  Q
    ||||||||||||   |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  17360831 aacaccacccataaaactaaacc-aaaaccaccgtaaacacatttttcaaacttttgtctatgtgcattttttcactaatatagtctcaacatgttatgt 17360929  T
Q  315 ttcatttgact 325  Q
    |||||||||||    
T  17360930 ttcatttgact 17360940  T

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Target: chr4; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 14 - 118
Target Start/End: Original strand, 17360333 - 17360445
Alignment:
Q  14 cagagaaataataaggtcttgaatgt--------atatatataaaacaatatgtaaaaggtttacgtcaattaagtttcaaaatttactagagtcaaagg 105  Q
    ||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17360333 cagagaaataataaggtcttgaatgtgtatatatatatatataaaacaatatgtaaaaggtttacgtcaattaagtttcaaaatttactagagtcaaagg 17360432  T
Q  106 tttcaattaaagt 118  Q
    |||||||||||||    
T  17360433 tttcaattaaagt 17360445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 375 - 442
Target Start/End: Original strand, 17363565 - 17363632
Alignment:
Q  375 catgatgagtgatgctacaagcataccacatgcaaccagagtctacgttggactttgacttacattat 442  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  17363565 catgatgagtgatgctacaagcataccacatgcaaccagagtccacgttggactttgacttacattat 17363632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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