View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10174_high_8 (Length: 413)

Name: NF10174_high_8
Description: NF10174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10174_high_8
NF10174_high_8
[»] chr1 (1 HSPs)
chr1 (1-398)||(7665710-7666107)


Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 7665710 - 7666107
Alignment:
1 agaactcatttctgaagcaattgaaagctgaacttgcaaagaatgatcacttacaaactattgtacaacaatgcctcaataatacagtcactgacagtaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
7665710 agaactcatttctgaagcaattgaaagctgaacttgcaaagaatgatcacttacaaactattgtacaacaatgcctcaataatacagtcactgacagtaa 7665809  T
101 ctacacagtgaaagaaggcttattatactggaagaacaaactagttttgccggtggatagttcattaatccaacaagtgttgcaagagtttcatgcttca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
7665810 ctacacagtgaaagaaggcttattatactggaagaacaaactagttttgccggtggatagttcattaatccaacaagtgttgcaagagtttcatgcttca 7665909  T
201 ccgattggagggcatgcaggcattactaggactatggcacgaataagtgctgaattttattggccaaatatgaagacggcggttcacaagttcatcacag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
7665910 ccgattggagggcatgcaggcattactaggactatggcacgaataagtgctgaattttattggccaaatatgaagacggcggttcacaagttcatcacag 7666009  T
301 aatgtctgatctgtcagcaggctaaacatatgactacactgccagcagggttgttgcagcctctaccaatacccactcaggtatgggaagatgttact 398  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
7666010 aatgtctgatctgtcagcaggctaaacatatgactacactgccagcagggttgttgcagcctctgccaatacccactcaggtatgggaagatgttact 7666107  T

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