View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10174_low_1 (Length: 706)
Name: NF10174_low_1
Description: NF10174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10174_low_1 |
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| [»] scaffold0051 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 665; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 665; E-Value: 0
Query Start/End: Original strand, 9 - 693
Target Start/End: Original strand, 37532324 - 37533008
Alignment:
| Q |
9 |
agcaaaggatctaccaggtgttgactgtgcccgcgtccagcaggcttcggttctaaagcttggagtcgagctccttttttatcttcaccaacatgtagat |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37532324 |
agcaaaggatctaccaggtgttgactgtgcccgcgtccagcaggcttcggttctaaagcttggagtcgagctccttttttatcttcaccaacatgtagat |
37532423 |
T |
|
| Q |
109 |
attgttcttgctttggttgttgatccattacatgaagatcttgttgacttatttgtgtacaattcttcagaaatctcttgttactcgagaaattgtcaag |
208 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
37532424 |
attgttcttgctttggttgttgatccattacatgaagatcttgttgacttatttgtgtgcaattcttcagaaatctcttgttactcgagaaattgtcaag |
37532523 |
T |
|
| Q |
209 |
ttgacaagtgcttggagttttattgacgagtttgactcggcgatatcgctgagaatccatggcagaagcatttggtttttgacctggagtctgttcttga |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37532524 |
ttgacaagtgcttggagttttattgacgagtttgactcggcgatatcgctgagaatccatggcagaagcatttggtttttgacctggagtctgttcttga |
37532623 |
T |
|
| Q |
309 |
tcagattgagatggagatgaatgctgagacagggaaagagaatgttcttcttgttctgagtcaacatcccacacctttgtagcagcaattctcctcctct |
408 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37532624 |
tcagattgagatggagatgaatgctgagacagggaaagagaatgttcttcttgttctgagtcaacatcccacacctttgtagcagcaattctcctcctct |
37532723 |
T |
|
| Q |
409 |
tctgttgtgaagttcctgcataacattataaattttaagtcgaattctcgagtctcttttacgggtgaaagagtcttaaacctacctgaatcaaattgat |
508 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
37532724 |
tctgttgtgaagttcctgcataacattataaattttaagtcgaattctcgagtctcttttacgcgtgaaagagtcttaaacctacctgaatcaaattgat |
37532823 |
T |
|
| Q |
509 |
acggttgcactttttctaatgcaactccataacccaattttcctaagacttccacattattcccgacacgcgaaattttctggtccaaaacacattgtta |
608 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37532824 |
atggttgcactttttctaatgcaactccataacccaattttcctaagacttccacattattcccgacacgcgaaattttctggtccaaaacacattgtta |
37532923 |
T |
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| Q |
609 |
gttctttttatcaaaggcatgctataatagtgaacaagtaccagttgttatttgaaacaacataaagcattgtaagagagttttg |
693 |
Q |
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| T |
37532924 |
gttctttttatcaaaggcatgctataatagtgaacaagtaccagttgttatttgaaacaacataaagcattttaagagagctttg |
37533008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 219 - 536
Target Start/End: Original strand, 26902122 - 26902440
Alignment:
| Q |
219 |
cttggagttttattgacgagtttgactcggcgatatcgctgagaatccatggcagaagcatttggtttttgacctggagtctgttcttgatcagattgag |
318 |
Q |
| |
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|||||| |||||||||| |||||||||| |||| | |||||||| ||| ||||||||||||||||||||||| |||| |||||| |||||||||||| |
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| T |
26902122 |
cttggaattttattgacaggtttgactcgatgatagtgttgagaatctatgacagaagcatttggtttttgacctagagtttgttctagatcagattgag |
26902221 |
T |
|
| Q |
319 |
atggagatgaatgctgagacagggaaagagaatgttcttcttgttctgagtcaacatcccacacctttgtagcagcaattctcctcctcttctgttgtga |
418 |
Q |
| |
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||||| ||||||||||||| || ||||||||||| |||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
26902222 |
atggaaatgaatgctgagaaagagaaagagaatgctcttgtttttctgattcaacatcccacacctttgtagcagcaattctcctcctcttctgttatga |
26902321 |
T |
|
| Q |
419 |
agttcctgcataacattataaattttaagtcgaattctcgagtc-tcttttacgggtgaaagagtcttaaacctacctgaatcaaattgatacggttgca |
517 |
Q |
| |
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|||||||||||||||||| ||||||||||| | ||||| |||| |||||||| |||||| |||||||||||||||||||||||||||| ||||||||| |
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| T |
26902322 |
agttcctgcataacattacaaattttaagttgggttctcaagtcttcttttacacgtgaaacagtcttaaacctacctgaatcaaattgacacggttgca |
26902421 |
T |
|
| Q |
518 |
ctttttctaatgcaactcc |
536 |
Q |
| |
|
|||||||| |||||||||| |
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| T |
26902422 |
ctttttctgatgcaactcc |
26902440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 527 - 686
Target Start/End: Original strand, 26902458 - 26902618
Alignment:
| Q |
527 |
atgcaactccataacccaattttcctaagacttccacattattcccgacacgcgaaattttctggtccaaaacacattgttagttctttttatcaaaggc |
626 |
Q |
| |
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|||||||||||| || | |||||||| ||||| |||| |||||||| | || ||||||||||||||| ||||||||||| ||||| | ||| ||||| || |
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| T |
26902458 |
atgcaactccattacgccattttcctgagactgccactttattcccaatactcgaaattttctggtcaaaaacacattggtagttatcttt-tcaaaagc |
26902556 |
T |
|
| Q |
627 |
atgctataata--gtgaacaagtaccagttgttatttgaaacaacataaagcattgtaagag |
686 |
Q |
| |
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| |||||||| || | | |||| |||| ||| |||||||||||| ||||||| |||||| |
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| T |
26902557 |
aaactataataatgtttagaggtactagttattagttgaaacaacatgaagcattataagag |
26902618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 392 - 514
Target Start/End: Original strand, 44199 - 44322
Alignment:
| Q |
392 |
agcaattctcctcctcttctgttgtgaagttcctgcataacattataaattttaagtcgaattctcgagtc-tcttttacgggtgaaagagtcttaaacc |
490 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||| | ||||||| | |||||||| |||| ||| |||| |||||| ||||||||||| |
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| T |
44199 |
agcaattctcctcctcttctgttgtgaagttcctacataacattacagattttaatttgaattctcaagtcgtctattacacgtgaaacagtcttaaacc |
44298 |
T |
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| Q |
491 |
tacctgaatcaaattgatacggtt |
514 |
Q |
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||||||||||||||||| |||||| |
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| T |
44299 |
tacctgaatcaaattgacacggtt |
44322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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