View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10174_low_11 (Length: 445)
Name: NF10174_low_11
Description: NF10174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF10174_low_11 |
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[»] chr7 (16 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 438; Significance: 0; HSPs: 16)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Original strand, 4713153 - 4713598
Alignment:
Q |
1 |
gactcatgtcagcactatggtgaagggtagtataggatatttggatccagagtgctacctacgaaacaagttgactcttaagtctgacgtgtactcattc |
100 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
T |
4713153 |
gactcatgtcagcactatggtgaagggtagtataggatatttggatccagagtgctacctacgaaacaagttgactcttaagtctgacgtgtactcattc |
4713252 |
T |
 |
Q |
101 |
ggagttgtgcttcttgaggtgttgtgtgcgagaccacctttggatcattctttggataaggaaaaagtgaacatggttgctttgttcaaaaaatgttaca |
200 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
4713253 |
ggagttgtgcttcttgaggtgttgtgtgcgagaccacctttggatcattctttggataaggaaaaagtgaacatggttgctttgttcaaaaaatgttaca |
4713352 |
T |
 |
Q |
201 |
atgaaggtgtgatagttgaagagatggtggacccgttcataaaggactctataacaagtgagtgtttgaaatgttattgtgaaatggtgttgagttgttt |
300 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
4713353 |
atgaaggtgtgatagttgaagagatggtggacccgttcataaaggactctataacaagtgagtgtttgaaatgttattgtgaaatggtgttgagttgttt |
4713452 |
T |
 |
Q |
301 |
gcatggtgatggaaatcaacgaatgtctatgagtgatgtggttgggactttagagcttgcgttgaaattggttatgagtggggaggatggtaagtttgat |
400 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
T |
4713453 |
gcatggtgatggaaatcaacgaatgtctatgagtgatgtggttgggactttagagcttgcgttgaaattggttatgagtggggaggatggtaagtttgat |
4713552 |
T |
 |
Q |
401 |
gcgacgcaaaaaggaggaagtaaagc-ataggttgaatattcattt |
445 |
Q |
|
|
|||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
T |
4713553 |
gcgacgcaaaaaggaggaagtaaagcaataggttgaatattcattt |
4713598 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 57 - 438
Target Start/End: Original strand, 4854579 - 4854962
Alignment:
Q |
57 |
acctacgaaacaagttgactcttaagtctgacgtgtactcattcggagttgtgcttcttgaggtgttgtgtgcgagaccacctttggatcattctttgga |
156 |
Q |
|
|
|||||||||||| ||||||||| |||||||| |||||||| ||||| | ||| ||||||||| |||||||||||||||||||||||||||||| ||||| |
|
|
T |
4854579 |
acctacgaaacaggttgactctaaagtctgatgtgtactctttcggtgatgtacttcttgagatgttgtgtgcgagaccacctttggatcatttattgga |
4854678 |
T |
 |
Q |
157 |
taaggaaaaagtgaacatggttgctttgttcaaaaaatgttacaatgaaggtgtgatagttgaagagatggtggacccgttcataaaggactctataaca |
256 |
Q |
|
|
|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
T |
4854679 |
taagaaaaaagtgaacatggttgctttgttcaaaaaatgttacaatgaaggagtgatagttgaagagatggtggacccattcataaaggactctataaca |
4854778 |
T |
 |
Q |
257 |
agtgagtgtttgaaatgttattgtgaaatggtgttgagttgtttgcatggtgatggaaatcaacgaatgtctatgagtgatgtggttgggactttagagc |
356 |
Q |
|
|
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
T |
4854779 |
agtgagtgtttgaaattttattgtcaaatggtgttgagttgtttgcatggtgatggaaatcaacggatgtctatgagtgatgtggttggaactttagagc |
4854878 |
T |
 |
Q |
357 |
ttgcgttgaaattggttatgagtggggaggatggtaagtttgatgcgacgca--aaaaggaggaagtaaagcataggttgaata |
438 |
Q |
|
|
||||||||||||||||||||||||||||| || |||||||||||||||| || ||| ||||||| |||||||||||||||||| |
|
|
T |
4854879 |
ttgcgttgaaattggttatgagtggggagaatagtaagtttgatgcgacccaagaaagggaggaattaaagcataggttgaata |
4854962 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 5 - 394
Target Start/End: Original strand, 4784926 - 4785315
Alignment:
Q |
5 |
catgtcagcactatggtgaagggtagtataggatatttggatccagagtgctacctacgaaacaagttgactcttaagtctgacgtgtactcattcggag |
104 |
Q |
|
|
|||||||||||||||||||| |||||| | || |||||||||||||| | |||| | ||| | | ||||||||| |||||||| |||||||| ||||| | |
|
|
T |
4784926 |
catgtcagcactatggtgaaaggtagtctcgggtatttggatccagaatactacatgcgacaaaggttgactctaaagtctgatgtgtactctttcggtg |
4785025 |
T |
 |
Q |
105 |
ttgtgcttcttgaggtgttgtgtgcgagaccacctttggatcattctttggataaggaaaaagtgaacatggttgctttgttcaaaaaatgttacaatga |
204 |
Q |
|
|
||||||||||||||||||||||||||||||| || |||| || ||||||||||||| |||||| | ||| || || ||| ||| |||||||||||| |
|
|
T |
4785026 |
ttgtgcttcttgaggtgttgtgtgcgagacccccgttggttcgttctttggataagaaaaaagcaagtttggctgtttggtttcaaacatgttacaatga |
4785125 |
T |
 |
Q |
205 |
aggtgtgatagttgaagagatggtggacccgttcataaaggactctataacaagtgagtgtttgaaatgttattgtgaaatggtgttgagttgtttgcat |
304 |
Q |
|
|
|||| || || ||||||| ||||||||||||||||| || || ||||||||||||||||||||||||||||||||| |||||||||| | |||||||||| |
|
|
T |
4785126 |
aggtatggtaattgaagatatggtggacccgttcattaaagattctataacaagtgagtgtttgaaatgttattgtcaaatggtgttaaattgtttgcat |
4785225 |
T |
 |
Q |
305 |
ggtgatggaaatcaacgaatgtctatgagtgatgtggttgggactttagagcttgcgttgaaattggttatgagtggggaggatggtaag |
394 |
Q |
|
|
| ||||||||||||||||||||| |||||||||||||||| ||| |||||| |||| ||| | || | ||||||| ||||||| ||||| |
|
|
T |
4785226 |
gatgatggaaatcaacgaatgtcgatgagtgatgtggttgcgacattagagtttgcattgcagttagagatgagtgaggaggatagtaag |
4785315 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 5 - 394
Target Start/End: Original strand, 4817355 - 4817744
Alignment:
Q |
5 |
catgtcagcactatggtgaagggtagtataggatatttggatccagagtgctacctacgaaacaagttgactcttaagtctgacgtgtactcattcggag |
104 |
Q |
|
|
|||||||||||||||||||| |||||| | || |||||||||||||| | |||| | ||| | | |||||||| |||||||| |||||||| ||||| | |
|
|
T |
4817355 |
catgtcagcactatggtgaaaggtagtctcgggtatttggatccagaatactacatgcgacaaagattgactctaaagtctgatgtgtactctttcggtg |
4817454 |
T |
 |
Q |
105 |
ttgtgcttcttgaggtgttgtgtgcgagaccacctttggatcattctttggataaggaaaaagtgaacatggttgctttgttcaaaaaatgttacaatga |
204 |
Q |
|
|
||||||||||||||||||||||||||||||| || |||| || |||||||||||| |||||| | ||| || || ||| ||| |||||||||||| |
|
|
T |
4817455 |
ttgtgcttcttgaggtgttgtgtgcgagacccccgttggttcggtctttggataagaaaaaagcaagtttggctgtttggtttcaaacatgttacaatga |
4817554 |
T |
 |
Q |
205 |
aggtgtgatagttgaagagatggtggacccgttcataaaggactctataacaagtgagtgtttgaaatgttattgtgaaatggtgttgagttgtttgcat |
304 |
Q |
|
|
|||| || || ||||||| ||||||||||||||||| || || ||||||||||||||||||||||||||||||||| |||||||||| | |||||||||| |
|
|
T |
4817555 |
aggtatggtaattgaagatatggtggacccgttcattaaagattctataacaagtgagtgtttgaaatgttattgtcaaatggtgttaaattgtttgcat |
4817654 |
T |
 |
Q |
305 |
ggtgatggaaatcaacgaatgtctatgagtgatgtggttgggactttagagcttgcgttgaaattggttatgagtggggaggatggtaag |
394 |
Q |
|
|
| ||||||||||||||||||||| |||||||||||||||| ||| |||||| |||| ||| | || | ||||||| ||||||| ||||| |
|
|
T |
4817655 |
gatgatggaaatcaacgaatgtcgatgagtgatgtggttgcgacattagagtttgcattgcagttagagatgagtgaggaggatagtaag |
4817744 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 2 - 360
Target Start/End: Complemental strand, 4862917 - 4862559
Alignment:
Q |
2 |
actcatgtcagcactatggtgaagggtagtataggatatttggatccagagtgctacctacgaaacaagttgactcttaagtctgacgtgtactcattcg |
101 |
Q |
|
|
||||| |||||||| |||||||||||||| | |||||||| |||||||| | |||||| || | | ||||||||| || || |||||||| || |||| |
|
|
T |
4862917 |
actcacgtcagcaccgtggtgaagggtagtcttggatatttagatccagaatactaccttcgtcaaaggttgactctaaaatccgacgtgtattctttcg |
4862818 |
T |
 |
Q |
102 |
gagttgtgcttcttgaggtgttgtgtgcgagaccacctttggatcattctttggataaggaaaaagtgaacatggttgctttgttcaaaaaatgttacaa |
201 |
Q |
|
|
| ||||| ||||||||||||||||||||||||||||| |||| || ||||| || ||| |||||| || | || | || ||| ||||||||||||| |
|
|
T |
4862817 |
gtgttgtccttcttgaggtgttgtgtgcgagaccaccattggttcgttcttctgaaaagaaaaaagcgagtttagtcgtttggtttcaaaaatgttacaa |
4862718 |
T |
 |
Q |
202 |
tgaaggtgtgatagttgaagagatggtggacccgttcataaaggactctataacaagtgagtgtttgaaatgttattgtgaaatggtgttgagttgtttg |
301 |
Q |
|
|
||||||||| ||| ||||||||||||| || ||||||||||| || ||||||||||||||||||||||||||||||||| ||||||| || ||||||||| |
|
|
T |
4862717 |
tgaaggtgtcataattgaagagatggtagatccgttcataaaagattctataacaagtgagtgtttgaaatgttattgtcaaatggttttaagttgtttg |
4862618 |
T |
 |
Q |
302 |
catggtgatggaaatcaacgaatgtctatgagtgatgtggttgggactttagagcttgc |
360 |
Q |
|
|
|||| |||||||||||||||||||| ||||||||||| ||||| |||||||| |||| |
|
|
T |
4862617 |
catgacgatggaaatcaacgaatgtcaatgagtgatgttgttggagctttagagtttgc |
4862559 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 8 - 398
Target Start/End: Original strand, 4698284 - 4698674
Alignment:
Q |
8 |
gtcagcactatggtgaagggtagtataggatatttggatccagagtgctacctacgaaacaagttgactcttaagtctgacgtgtactcattcggagttg |
107 |
Q |
|
|
|||||||||| ||||||||||||| | || ||||| ||||| || | |||||| || | | |||||| || ||||| ||||||||||| || || |||| |
|
|
T |
4698284 |
gtcagcactaaggtgaagggtagtctcgggtatttagatcccgaatactaccttcgtcaaaggttgaccctaaagtccgacgtgtactcttttggtgttg |
4698383 |
T |
 |
Q |
108 |
tgcttcttgaggtgttgtgtgcgagaccacctttggatcattctttggataaggaaaaagtgaacatggttgctttgttcaaaaaatgttacaatgaagg |
207 |
Q |
|
|
||||||||||||| |||||||||||||||||||||| || ||||||||| ||| |||||| || | || || |||| ||| ||||||||||||||| |
|
|
T |
4698384 |
tgcttcttgaggtattgtgtgcgagaccacctttggttcgttctttggaaaagaaaaaagcgagtttagtcttttggttccaaagatgttacaatgaagg |
4698483 |
T |
 |
Q |
208 |
tgtgatagttgaagagatggtggacccgttcataaaggactctataacaagtgagtgtttgaaatgttattgtgaaatggtgttgagttgtttgcatggt |
307 |
Q |
|
|
|||||| | ||||||||||||||||||||||||||||| |||||||| ||| ||| | ||| ||||||| |||||||||||||||||||||||| | |
|
|
T |
4698484 |
tgtgatcatcgaagagatggtggacccgttcataaaggattctataacggctgaatgtctaaaaagttattgccaaatggtgttgagttgtttgcatgat |
4698583 |
T |
 |
Q |
308 |
gatggaaatcaacgaatgtctatgagtgatgtggttgggactttagagcttgcgttgaaattggttatgagtggggaggatggtaagtttg |
398 |
Q |
|
|
|||||||||||||| ||||| ||||||||||| ||||| |||||||| |||| ||| | |||| || |||| ||||||| |||||||| |
|
|
T |
4698584 |
gatggaaatcaacggatgtcgatgagtgatgttgttggagctttagagtttgcattgcagttggagataagtgaggaggatactaagtttg |
4698674 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 4847108 - 4847169
Alignment:
Q |
1 |
gactcatgtcagcactatggtgaagggtagtataggatatttggatccagagtgctacctac |
62 |
Q |
|
|
||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
T |
4847108 |
gactcatgtaagcactatggtgaagggtagtataggatatttggatccagaatgttacctac |
4847169 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 74 - 160
Target Start/End: Complemental strand, 4652476 - 4652390
Alignment:
Q |
74 |
actcttaagtctgacgtgtactcattcggagttgtgcttcttgaggtgttgtgtgcgagaccacctttggatcattctttggataag |
160 |
Q |
|
|
||||| || ||||| |||||||||||||| || ||||||||||||||||||||||| ||||||||||||| || | |||||||||| |
|
|
T |
4652476 |
actctaaaatctgatgtgtactcattcggtgtggtgcttcttgaggtgttgtgtgctagaccacctttggttcgtgatttggataag |
4652390 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 74 - 143
Target Start/End: Complemental strand, 4635813 - 4635744
Alignment:
Q |
74 |
actcttaagtctgacgtgtactcattcggagttgtgcttcttgaggtgttgtgtgcgagaccacctttgg |
143 |
Q |
|
|
|||||||| || ||||||||||||||||| || ||||||||||||||||||||||| || |||||||||| |
|
|
T |
4635813 |
actcttaaatcagacgtgtactcattcggtgtggtgcttcttgaggtgttgtgtgctaggccacctttgg |
4635744 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 74 - 160
Target Start/End: Complemental strand, 4629865 - 4629779
Alignment:
Q |
74 |
actcttaagtctgacgtgtactcattcggagttgtgcttcttgaggtgttgtgtgcgagaccacctttggatcattctttggataag |
160 |
Q |
|
|
||||| || |||||||||||||| || || || ||||||||||||||||||||||| ||||||||||||| || | |||||||||| |
|
|
T |
4629865 |
actctaaaatctgacgtgtactcgtttggtgtggtgcttcttgaggtgttgtgtgctagaccacctttggttcgtgatttggataag |
4629779 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 74 - 160
Target Start/End: Complemental strand, 4665891 - 4665805
Alignment:
Q |
74 |
actcttaagtctgacgtgtactcattcggagttgtgcttcttgaggtgttgtgtgcgagaccacctttggatcattctttggataag |
160 |
Q |
|
|
||||| || ||||| |||||||| ||||| || ||||||||||||||||||||||| ||||||||||||| || | |||||||||| |
|
|
T |
4665891 |
actctaaaatctgatgtgtactcgttcggtgtggtgcttcttgaggtgttgtgtgctagaccacctttggttcgtgatttggataag |
4665805 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 74 - 143
Target Start/End: Complemental strand, 4660757 - 4660688
Alignment:
Q |
74 |
actcttaagtctgacgtgtactcattcggagttgtgcttcttgaggtgttgtgtgcgagaccacctttgg |
143 |
Q |
|
|
||||| || ||||| |||||||| ||||| || ||||||||||||||||||||||| || ||||| |||| |
|
|
T |
4660757 |
actctaaaatctgaagtgtactcgttcggtgtggtgcttcttgaggtgttgtgtgctaggccaccattgg |
4660688 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 372
Target Start/End: Complemental strand, 4642441 - 4642362
Alignment:
Q |
293 |
agttgtttgcatggtgatggaaatcaacgaatgtctatgagtgatgtggttgggactttagagcttgcgttgaaattggt |
372 |
Q |
|
|
||||||||||||| |||||||| ||||||| || |||||| | ||||||||| ||||||| |||||||| ||||||| |
|
|
T |
4642441 |
agttgtttgcatgatgatggaattcaacgaccctcaatgagtcaagtggttgggggtttagagtttgcgttgcaattggt |
4642362 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 372
Target Start/End: Complemental strand, 4671412 - 4671298
Alignment:
Q |
258 |
gtgagtgtttgaaatgttattgtgaaatggtgttgagttgtttgcatggtgatggaaatcaacgaatgtctatgagtgatgtggttgggactttagagct |
357 |
Q |
|
|
||||||||||| ||| |||||| | ||| ||||||||| ||||||| |||||||| ||||||| || |||||| | ||||||||| ||||||| | |
|
|
T |
4671412 |
gtgagtgtttggaatattattgcaagttggcgttgagttgcttgcatgatgatggaactcaacgaccctcaatgagtcaagtggttgggggtttagagtt |
4671313 |
T |
 |
Q |
358 |
tgcgttgaaattggt |
372 |
Q |
|
|
|| |||| ||||||| |
|
|
T |
4671312 |
tgtgttgcaattggt |
4671298 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 143
Target Start/End: Complemental strand, 4671581 - 4671527
Alignment:
Q |
89 |
gtgtactcattcggagttgtgcttcttgaggtgttgtgtgcgagaccacctttgg |
143 |
Q |
|
|
|||||||||||||| || || |||||||| ||||||||||| || |||||||||| |
|
|
T |
4671581 |
gtgtactcattcggtgtggtacttcttgaagtgttgtgtgctaggccacctttgg |
4671527 |
T |
 |
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 293 - 369
Target Start/End: Complemental strand, 4635594 - 4635518
Alignment:
Q |
293 |
agttgtttgcatggtgatggaaatcaacgaatgtctatgagtgatgtggttgggactttagagcttgcgttgaaatt |
369 |
Q |
|
|
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|
|
T |
4635594 |
agttgtttgcatgatgatggaattcaacgaccctcaatgagtcaagtggttgggggtttagagtttgcgttgcaatt |
4635518 |
T |
 |
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 83 - 143
Target Start/End: Original strand, 18926908 - 18926968
Alignment:
Q |
83 |
tctgacgtgtactcattcggagttgtgcttcttgaggtgttgtgtgcgagaccacctttgg |
143 |
Q |
|
|
|||||||||||||||||||| || |||||||||||||| |||||||| || |||||||||| |
|
|
T |
18926908 |
tctgacgtgtactcattcggtgtggtgcttcttgaggtattgtgtgcaaggccacctttgg |
18926968 |
T |
 |
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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