View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10174_low_12 (Length: 444)
Name: NF10174_low_12
Description: NF10174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10174_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 18 - 422
Target Start/End: Complemental strand, 40673096 - 40672692
Alignment:
| Q |
18 |
tctcataccaagaaacactcaatgctgatgtattttacagagatgaatatggcgatgtgactctcaagacatcaactcttcaacctttcaacggcagcat |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
40673096 |
tctcataccaagaaacactcaatgctgatgtattttacagagatgaatatggcgatgtgactctcaagacatcaactattcaacctttcaacggcagcat |
40672997 |
T |
|
| Q |
118 |
gattgagctgaagctgaaagtagactcgtatgagccacttcacttggccgagagcattgttcgaaggcgccgtaaacatggaagggttgcattcgggctc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
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| T |
40672996 |
gattgagctgaagctgaaagtagactcgtatgagccacttcacttggccgagagcattgttcggaggcgccgtgaacatggaagggttgcattcgggctc |
40672897 |
T |
|
| Q |
218 |
aaagtgttcacttccatcgggttcaagagttatatctttgtttccaatcggaaacatttgaagtatgtttgctacccactaagctttggaatttcgaaaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40672896 |
aaagtgttcacttccatcgggttcaagagttatatctttgtttccaatcggaaacatttgaagtatgtttgctacccactaagctttggaatttcgaaaa |
40672797 |
T |
|
| Q |
318 |
atgtctacaattcaaccccagctgctctacttcaaggtgtaacatgcactaacacttagtattattgatttacacttattagttactatattataggtat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40672796 |
atgtctacaattcaaccccagctgctctacttcaaggtgtaacatgcactaacacttagtattattgatttacacttattagttactatattataggtat |
40672697 |
T |
|
| Q |
418 |
ctgtg |
422 |
Q |
| |
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||||| |
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| T |
40672696 |
ctgtg |
40672692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 328
Target Start/End: Complemental strand, 40683416 - 40683106
Alignment:
| Q |
18 |
tctcataccaagaaacactcaatgctgatgtattttacagagatgaatatggcg--atg-tgactctcaagacatcaactcttcaacctttcaacggcag |
114 |
Q |
| |
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||||||||||||| |||||| ||||||| ||||||||| ||||||||||||| || | ||||| || ||||||||| |||||||||||||||| || |
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| T |
40683416 |
tctcataccaagatacactcgatgctgagatattttacatggatgaatatggcggcatcatcactctaaatacatcaactattcaacctttcaacggtag |
40683317 |
T |
|
| Q |
115 |
catgattgagctgaagctgaaagtagactcgtatgagccacttcacttggccgagagcattgttcgaaggcgccgtaaacatggaagggttgcattcggg |
214 |
Q |
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|||||||||| |||||||||| |||||||||| |||||| |||| || | | | |||| ||| || ||||| ||||||||||||||| |||||| |
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| T |
40683316 |
catgattgagatgaagctgaaggtagactcgtgtgagcc---tcacgtgactaacaacatttatcgtagccgccgagaacatggaagggttgaattcggt |
40683220 |
T |
|
| Q |
215 |
ctcaaagtgttcacttccatcgggttcaagagttatatctttgtttccaatcggaaacatttgaagtatgtttgctacccactaagctttggaatttcga |
314 |
Q |
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|||||| |||||||||||||| ||| |||| ||||||||| ||||| ||| | ||||||| ||||||||||||||| ||||||| |||||| |
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| T |
40683219 |
ctcaaattgttcacttccatccagtttaagaaagatatctttgaatccaactggataactttgaaggttgtttgctacccacttagctttgttatttcgc |
40683120 |
T |
|
| Q |
315 |
aaaatgtctacaat |
328 |
Q |
| |
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|||||||||||||| |
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|
| T |
40683119 |
aaaatgtctacaat |
40683106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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