View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10174_low_14 (Length: 430)

Name: NF10174_low_14
Description: NF10174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10174_low_14
NF10174_low_14
[»] chr2 (2 HSPs)
chr2 (1-414)||(16309667-16310074)
chr2 (30-74)||(10602005-10602049)


Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 16310074 - 16309667
Alignment:
Q  1 agtggagtagcataggttcaaacccgaatcctgcaaataacaatgcatgtctctaccaatatgctcacggggactcttctaaaacttttctaatgacctc 100  Q
    ||||||||  || ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16310074 agtggagtgtcagaggttcaaatccaaatcctgcaaataacaatgcatgtctctaccaatatgctcacggggactcttctaaaacttttctaatgacctc 16309975  T
Q  101 aatatcattccaaatgtatgtatattgtgacgcatatttaattaattaatacaattattttttatacatgtatccggtaatatattgccacgtcaatact 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16309974 aatatcattccaaatgtatgtatattgtgacgcatatttaattaattaatacaattattttttatacatgtatccggtaatatattgccacgtcaatact 16309875  T
Q  201 catactcatatcaaaacacatatacacgagggagtattattttacacatgcatgtgttcaaacgtcgatnnnnnnnttgtttggtgcaagagaagcaaaa 300  Q
    ||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||    
T  16309874 cata------tcaaaacacatatacacgagggagtattattttacacatgcatgtgttcaaacgtcgataaaaaaattgtttggtgcaagagaagcaaaa 16309781  T
Q  301 agtgattgtttttccatcttggtctgcaagccagccactgctcactgccattcgacttgattttaaggtttgtactatcaacacttctgatcgaaaaatt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16309780 agtgattgtttttccatcttggtctgcaagccagccactgctcactgccattcgacttgattttaaggtttgtactatcaacacttctgatcgaaaaatt 16309681  T
Q  401 gtccgacacatatt 414  Q
    ||||||||||||||    
T  16309680 gtccgacacatatt 16309667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 10602049 - 10602005
Alignment:
Q  30 cctgcaaataacaatgcatgtctctaccaatatgctcacggggac 74  Q
    |||||| |||||||||||||||||| |||| |||||||| |||||    
T  10602049 cctgcatataacaatgcatgtctctgccaacatgctcacagggac 10602005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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