View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10174_low_14 (Length: 430)
Name: NF10174_low_14
Description: NF10174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10174_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 16310074 - 16309667
Alignment:
| Q |
1 |
agtggagtagcataggttcaaacccgaatcctgcaaataacaatgcatgtctctaccaatatgctcacggggactcttctaaaacttttctaatgacctc |
100 |
Q |
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|||||||| || ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16310074 |
agtggagtgtcagaggttcaaatccaaatcctgcaaataacaatgcatgtctctaccaatatgctcacggggactcttctaaaacttttctaatgacctc |
16309975 |
T |
|
| Q |
101 |
aatatcattccaaatgtatgtatattgtgacgcatatttaattaattaatacaattattttttatacatgtatccggtaatatattgccacgtcaatact |
200 |
Q |
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| T |
16309974 |
aatatcattccaaatgtatgtatattgtgacgcatatttaattaattaatacaattattttttatacatgtatccggtaatatattgccacgtcaatact |
16309875 |
T |
|
| Q |
201 |
catactcatatcaaaacacatatacacgagggagtattattttacacatgcatgtgttcaaacgtcgatnnnnnnnttgtttggtgcaagagaagcaaaa |
300 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
16309874 |
cata------tcaaaacacatatacacgagggagtattattttacacatgcatgtgttcaaacgtcgataaaaaaattgtttggtgcaagagaagcaaaa |
16309781 |
T |
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| Q |
301 |
agtgattgtttttccatcttggtctgcaagccagccactgctcactgccattcgacttgattttaaggtttgtactatcaacacttctgatcgaaaaatt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16309780 |
agtgattgtttttccatcttggtctgcaagccagccactgctcactgccattcgacttgattttaaggtttgtactatcaacacttctgatcgaaaaatt |
16309681 |
T |
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| Q |
401 |
gtccgacacatatt |
414 |
Q |
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| T |
16309680 |
gtccgacacatatt |
16309667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 10602049 - 10602005
Alignment:
| Q |
30 |
cctgcaaataacaatgcatgtctctaccaatatgctcacggggac |
74 |
Q |
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|||||| |||||||||||||||||| |||| |||||||| ||||| |
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| T |
10602049 |
cctgcatataacaatgcatgtctctgccaacatgctcacagggac |
10602005 |
T |
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