View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10174_low_15 (Length: 422)
Name: NF10174_low_15
Description: NF10174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10174_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 219 - 415
Target Start/End: Complemental strand, 51883018 - 51882822
Alignment:
| Q |
219 |
gtcatattgaaggcacgttttatcatttccttaaattaaattaagtacatgtaattaaactctcgttgaaatatcactttttcttcttcctttgtgtttc |
318 |
Q |
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| T |
51883018 |
gtcatattgaaggcacgtgttatcatttccttaaattaaattaagtacatgtaattaaactctcgttgaaatatcactttttcttcttcctttgtgtttc |
51882919 |
T |
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| Q |
319 |
gtgttgaagcgttggccgcgatcctcgttagtatctagactatatactcctccgtacgagtacgatttatttattcacagattcgtattcttctctc |
415 |
Q |
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| T |
51882918 |
gtgttgaagcgttggccgcgatcctcgttagtatctagactatatactcctccgtacgagtacgatttatttattcacagatttgtattcttctctc |
51882822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 51883294 - 51883210
Alignment:
| Q |
18 |
aaaccaaagaatctttatattacaagtgag-atttacaatttgttttttccgggtaaaccaaaagacccccaaatgacaatggataa |
103 |
Q |
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| T |
51883294 |
aaaccaaagaatctttatattacaagtgagaatttacaatt--tttttttgaggtaaaccaatagaccctcaaatggcaagggataa |
51883210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 44
Target Start/End: Complemental strand, 46540555 - 46540526
Alignment:
| Q |
15 |
tcaaaaccaaagaatctttatattacaagt |
44 |
Q |
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| T |
46540555 |
tcaaaaccaaagaatctttatattacaagt |
46540526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 25648730 - 25648682
Alignment:
| Q |
18 |
aaaccaaagaatctttatattacaagtgag-atttacaatttgtttttt |
65 |
Q |
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||||||| |||||||||||||||||||||| || |||||||| |||||| |
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| T |
25648730 |
aaaccaaggaatctttatattacaagtgagaatctacaatttttttttt |
25648682 |
T |
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