View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10174_low_17 (Length: 399)
Name: NF10174_low_17
Description: NF10174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10174_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 185 - 389
Target Start/End: Original strand, 52863743 - 52863947
Alignment:
| Q |
185 |
cgaagagttgggcaagtgaaatattgtgtttgaagctgaatttgaagtgaaattaagcaaaacaaatgaaaccctgaaaggatgataatgaaaagaaaga |
284 |
Q |
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| T |
52863743 |
cgaagagttgggcaagtgaaatattgtgtttgaagatgaatttgaagtgaaattaagcaaaacaaatgaaacccagaaaggatgataatgaaaagaaaga |
52863842 |
T |
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| Q |
285 |
aaactcacaattcgatcaggagtaccaactggagcatcaagaacacgaatgcgagcatgagtctcttcgcaagtctttttgatcaattcccctttacggc |
384 |
Q |
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| T |
52863843 |
aaactcacaattcgatcaggagtaccaactggagcatcaagaacacgaatgcgagcatgagtctcttcgcaagtctttttgatcaattcccctttacggc |
52863942 |
T |
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| Q |
385 |
ctatg |
389 |
Q |
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||||| |
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| T |
52863943 |
ctatg |
52863947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 52863559 - 52863672
Alignment:
| Q |
1 |
tatatattacaaaattcaacagaatttagtagtgtcatcaagtcatataaatcctatagagagtccaatacaccaacaagcaaagattctttaattaaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
52863559 |
tatatattacaaaattcaacagaatttagtagtgtcatcaagtcatataaatcctatagagactccactacaccaacaagcaaagattctttaattaaat |
52863658 |
T |
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| Q |
101 |
tttagtttttaaga |
114 |
Q |
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| T |
52863659 |
tttagtttttaaga |
52863672 |
T |
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