View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10174_low_19 (Length: 376)
Name: NF10174_low_19
Description: NF10174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10174_low_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 171; Significance: 9e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 84 - 369
Target Start/End: Complemental strand, 1663947 - 1663662
Alignment:
| Q |
84 |
taaaaactccaaggaagaaagtcnnnnnnnttagagagagataattgaataactattttgtttgctttattcattgaatgataaagggatttaaagagcc |
183 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1663947 |
taaaaactccaaggaagaaagtcaaaaaaatcagagagagataattgaat--ctattttgcttgctttattcattgaatgataaagggttttaaagagcc |
1663850 |
T |
|
| Q |
184 |
ttctactaacagaatttccacaattgtagataatatagcataacagaaagtnnnnnnnnnnnnnn--tttgatatagcagttcttaaaaagatttggtag |
281 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||| |||||||| |
|
|
| T |
1663849 |
ttctactaacagaattgccacaattgtagataacatagcataacagaaagtaaaaaaaaatgaaaaatttgatatagcagttctttaaaagttttggtag |
1663750 |
T |
|
| Q |
282 |
ctgtaattagctaaatttctaaattggtcaagggatcccacgtagttatccaaccatttaggaggtttgtggatcctcttatcctttg |
369 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1663749 |
ctgtaaatagctaaatttctaaattggtcaagggatcccacgtagttatccaaccatttaggaggtttgtggatcctcttatcctttg |
1663662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 120 - 234
Target Start/End: Original strand, 22782867 - 22782981
Alignment:
| Q |
120 |
agagataattgaataactattttgtttgctttattcattgaatgataaagggatttaaagagccttctactaacagaatttccacaattgtagataatat |
219 |
Q |
| |
|
||||||| |||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
22782867 |
agagatatttgaataactattttgcttactttattcattgaatgataaagggttttaaagagccttctactaacagaatggccacaattgtagataatat |
22782966 |
T |
|
| Q |
220 |
agcataacagaaagt |
234 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
22782967 |
agcataacaaaaagt |
22782981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University