View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10174_low_2 (Length: 580)

Name: NF10174_low_2
Description: NF10174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10174_low_2
NF10174_low_2
[»] chr6 (10 HSPs)
chr6 (1-564)||(28992261-28992823)
chr6 (329-447)||(3606962-3607080)
chr6 (286-356)||(23252892-23252962)
chr6 (300-360)||(35187897-35187957)
chr6 (343-461)||(30841159-30841276)
chr6 (300-364)||(2725838-2725902)
chr6 (362-461)||(2904751-2904850)
chr6 (304-386)||(2744125-2744207)
chr6 (331-424)||(2146770-2146863)
chr6 (342-406)||(3644785-3644849)
[»] chr8 (8 HSPs)
chr8 (289-461)||(12750154-12750326)
chr8 (322-461)||(5995128-5995267)
chr8 (300-367)||(43846260-43846327)
chr8 (325-461)||(157476-157612)
chr8 (305-406)||(34072884-34072985)
chr8 (319-371)||(33102092-33102144)
chr8 (300-357)||(22842158-22842215)
chr8 (300-369)||(33581841-33581910)
[»] chr1 (10 HSPs)
chr1 (288-455)||(622845-623012)
chr1 (305-417)||(31847668-31847780)
chr1 (319-386)||(3851733-3851798)
chr1 (313-416)||(10608906-10609009)
chr1 (300-387)||(21322540-21322627)
chr1 (343-447)||(14210655-14210759)
chr1 (330-368)||(52186902-52186940)
chr1 (392-461)||(43908996-43909065)
chr1 (300-336)||(30871899-30871935)
chr1 (342-370)||(32815793-32815821)
[»] chr5 (11 HSPs)
chr5 (291-450)||(37442516-37442674)
chr5 (287-461)||(8254695-8254868)
chr5 (289-461)||(9828179-9828349)
chr5 (289-389)||(32303607-32303707)
chr5 (322-416)||(8055187-8055283)
chr5 (345-406)||(28228862-28228923)
chr5 (343-415)||(42158282-42158354)
chr5 (342-384)||(28217977-28218019)
chr5 (342-384)||(28228832-28228874)
chr5 (313-443)||(42923876-42924006)
chr5 (331-416)||(32827017-32827102)
[»] chr7 (5 HSPs)
chr7 (289-423)||(33818889-33819023)
chr7 (351-464)||(3557101-3557214)
chr7 (319-461)||(3756404-3756546)
chr7 (329-461)||(5758781-5758913)
chr7 (60-116)||(24411904-24411960)
[»] chr4 (16 HSPs)
chr4 (342-417)||(7095582-7095657)
chr4 (319-417)||(36138962-36139060)
chr4 (305-386)||(53979029-53979110)
chr4 (313-389)||(684197-684273)
chr4 (305-382)||(52450149-52450226)
chr4 (331-423)||(50136509-50136601)
chr4 (330-417)||(37182205-37182292)
chr4 (342-461)||(42096747-42096866)
chr4 (313-417)||(17399627-17399731)
chr4 (300-368)||(29405125-29405193)
chr4 (329-417)||(30211942-30212030)
chr4 (313-380)||(16962841-16962908)
chr4 (344-407)||(55301391-55301454)
chr4 (319-386)||(56210954-56211020)
chr4 (300-406)||(42747089-42747194)
chr4 (290-415)||(47583504-47583629)
[»] chr2 (13 HSPs)
chr2 (300-387)||(13387327-13387414)
chr2 (289-407)||(33833402-33833519)
chr2 (288-461)||(39555916-39556087)
chr2 (300-405)||(17793883-17793987)
chr2 (331-416)||(17793993-17794078)
chr2 (342-387)||(44069893-44069938)
chr2 (1-135)||(40410191-40410326)
chr2 (373-455)||(8514002-8514084)
chr2 (300-405)||(32016431-32016537)
chr2 (321-387)||(44540691-44540757)
chr2 (319-387)||(6620032-6620100)
chr2 (374-470)||(13387370-13387465)
chr2 (427-455)||(44540668-44540696)
[»] chr3 (6 HSPs)
chr3 (319-387)||(35310401-35310469)
chr3 (319-387)||(20991581-20991649)
chr3 (289-384)||(18360113-18360206)
chr3 (373-464)||(18360065-18360155)
chr3 (39-122)||(19630606-19630690)
chr3 (39-122)||(19654867-19654951)
[»] scaffold0004 (1 HSPs)
scaffold0004 (307-387)||(130712-130792)
[»] scaffold0580 (2 HSPs)
scaffold0580 (1-135)||(1230-1365)
scaffold0580 (1-135)||(8969-9104)
[»] scaffold0254 (1 HSPs)
scaffold0254 (331-424)||(23231-23324)


Alignment Details
Target: chr6 (Bit Score: 456; Significance: 0; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 1 - 564
Target Start/End: Complemental strand, 28992823 - 28992261
Alignment:
Q  1 gtaaagagtgagatacctgacccaacactatgcaataatatttatagagaatgagtaggtttttggatgttaggccttcacctagacatgtatcatttaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  28992823 gtaaagagtgagatacctgacccaacactatgcaataatatttatagagaatgagtaggtttttggctgttaggccttcacctagacatgtatcatttaa 28992724  T
Q  101 ggacacttgtaatgatctggagacaatcacatcatatgatacatattggacggtctagatggacgctctggaccatgatctagtgggattagggaatgac 200  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  28992723 ggacacttgtaatgatctggagacagtcacatcatatgatacatatcggacggtttagatggacgctctggaccatgatctagtgggattagggaatgac 28992624  T
Q  201 caatatgatctgcccaatgttaaactccaattggatctggattttaatatggatgggaccttgacctagtctgaaacaagaatattatgataatttctat 300  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |    
T  28992623 caatatggtctgcccaatgttaaactgcaattggatctggattttaatatggattggaccttgacctagtctgaaacaagaatattatgataatttctct 28992524  T
Q  301 tcttccatctggttttattcattcccgttaaaatagccgatcgtgagttaactcacgcatgtgtattttcattgtgagttaactcacatgtgtgtatttt 400  Q
    ||| ||||||||||||  |||||||||||||||||| ||||||||| ||||||||| ||||||||||||||  |||||||||||||| | ||||||||||    
T  28992523 tctcccatctggttttgctcattcccgttaaaatagacgatcgtgatttaactcacacatgtgtattttcagcgtgagttaactcacgtatgtgtatttt 28992424  T
Q  401 tcagcgtcagttaactctcgtagagagggaataagcaaaaacagatgagagaagaacaattatcgaatattattcataaatttcattgcaaactcttgct 500  Q
    ||||||| ||||||||| |||||||||||||| || ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  28992423 tcagcgtgagttaactcacgtagagagggaatgagtaaaaacagatgggagaagagcaattatcgaatattattcataaatttcattgcaaactcttgct 28992324  T
Q  501 aacattgatgttgtccacaccatcttcttaaaagcaagaagctagtcaaaggaaatgaaagatg 564  Q
    || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28992323 aata-tgatgttgtccacaccatcttcttaaaagcaagaagctagtcaaaggaaatgaaagatg 28992261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 329 - 447
Target Start/End: Complemental strand, 3607080 - 3606962
Alignment:
Q  329 taaaatagccgatcgtgagttaactcacgcatgtgtattttcattgtgagttaactcacatgtgtgtatttttcagcgtcagttaactctcgtagagagg 428  Q
    ||||||||  || ||||| || ||||||||||||||||||| |  |||||||||||||| |  ||||||||| |||||| |||||||||  |||||| ||    
T  3607080 taaaatagttgagcgtgaattgactcacgcatgtgtatttttaacgtgagttaactcacgtaggtgtattttccagcgtaagttaactcatgtagagtgg 3606981  T
Q  429 gaataagcaaaaacagatg 447  Q
     ||| |||||||| |||||    
T  3606980 aaatgagcaaaaatagatg 3606962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 286 - 356
Target Start/End: Complemental strand, 23252962 - 23252892
Alignment:
Q  286 tatgataatttctattcttccatctggttttattcattcccgttaaaatagccgatcgtgagttaactcac 356  Q
    |||||||||| || |||| ||||||||||||  |||||||||| ||||||||||| |||||||||||||||    
T  23252962 tatgataattgcttttctcccatctggttttgctcattcccgtcaaaatagccgagcgtgagttaactcac 23252892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 300 - 360
Target Start/End: Original strand, 35187897 - 35187957
Alignment:
Q  300 ttcttccatctggttttattcattcccgttaaaatagccgatcgtgagttaactcacgcat 360  Q
    |||||||||||| ||||  |||||||||||||||||| ||| |||||||||||||||||||    
T  35187897 ttcttccatctgattttgctcattcccgttaaaatagtcgaccgtgagttaactcacgcat 35187957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 343 - 461
Target Start/End: Original strand, 30841159 - 30841276
Alignment:
Q  343 gtgagttaactcacgcatgtgtattttcattgtgagttaactcacatgtgtgtatttttcagcgtcagttaactctcgtagagagggaataagcaaaaac 442  Q
    ||||| |||||||| |||| ||||||||| | |||||||||| | |  | ||||||||||||  | ||||||||| ||||||   |||||||||||||||    
T  30841159 gtgagctaactcacacatgcgtattttcagtatgagttaacttatacat-tgtatttttcagtatgagttaactcacgtagaacaggaataagcaaaaac 30841257  T
Q  443 agatgagagaagaacaatt 461  Q
    ||||| ||||||| |||||    
T  30841258 agatgtgagaagagcaatt 30841276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 300 - 364
Target Start/End: Complemental strand, 2725902 - 2725838
Alignment:
Q  300 ttcttccatctggttttattcattcccgttaaaatagccgatcgtgagttaactcacgcatgtgt 364  Q
    |||| ||||||| ||||  |||||||||| ||||||||||| |||||||||||||||||| ||||    
T  2725902 ttctcccatctgtttttgctcattcccgtcaaaatagccgagcgtgagttaactcacgcaagtgt 2725838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 362 - 461
Target Start/End: Original strand, 2904751 - 2904850
Alignment:
Q  362 tgtattttcattgtgagttaactcacatgtgtgtatttttcagcgtcagttaactctcgtagagagggaataagcaaaaacagatgagagaagaacaatt 461  Q
    ||||||||||  |||||||||||||| |  ||||||||||| |||| ||||||||| ||| |  || |||| ||||||| || ||||||||||| |||||    
T  2904751 tgtattttcaacgtgagttaactcacgtaggtgtatttttctgcgtgagttaactcacgttggaagagaatgagcaaaatcaaatgagagaagagcaatt 2904850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 386
Target Start/End: Original strand, 2744125 - 2744207
Alignment:
Q  304 tccatctggttttattcattcccgttaaaatagccgatcgtgagttaactcacgcatgtgtattttcattgtgagttaactca 386  Q
    |||||||| ||||  || ||||||| |||||| | || |||||||||||||||||||||| ||||| |  |||||||||||||    
T  2744125 tccatctgtttttgctcgttcccgtcaaaataacagaacgtgagttaactcacgcatgtgcatttttaacgtgagttaactca 2744207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 331 - 424
Target Start/End: Original strand, 2146770 - 2146863
Alignment:
Q  331 aaatagccgatcgtgagttaactcacgcatgtgtattttcattgtgagttaactcacatgtgtgtatttttcagcgtcagttaactctcgtaga 424  Q
    ||||||| || ||||||| |||||||||||||||| |||||  ||||||||||| || |  |||| ||||||| ||| | ||||||| ||||||    
T  2146770 aaatagcagagcgtgagtgaactcacgcatgtgtaatttcaacgtgagttaacttacgtaggtgtgtttttcaacgtgaattaactcacgtaga 2146863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 342 - 406
Target Start/End: Original strand, 3644785 - 3644849
Alignment:
Q  342 cgtgagttaactcacgcatgtgtattttcattgtgagttaactcacatgtgtgtatttttcagcg 406  Q
    |||||||||||| | ||| ||||||||||| |||||||||||| |||  ||| ||||| ||||||    
T  3644785 cgtgagttaacttatgcaggtgtattttcagtgtgagttaacttacacatgtctatttctcagcg 3644849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 3e-28; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 289 - 461
Target Start/End: Original strand, 12750154 - 12750326
Alignment:
Q  289 gataatttctattcttccatctggttttattcattcccgttaaaatagccgatcgtgagttaactcacgcatgtgtattttcattgtgagttaactcaca 388  Q
    ||||||| || |||| ||||||| ||||  |||| |||||  |||||||||| |||||||||||||||||| ||||||||||| || || |||||| ||     
T  12750154 gataattgctcttctcccatctgtttttcctcatccccgtccaaatagccgagcgtgagttaactcacgcaggtgtattttcagtgcgaattaacttacg 12750253  T
Q  389 tgtgtgtatttttcagcgtcagttaactctcgtagagagggaataagcaaaaacagatgagagaagaacaatt 461  Q
    |  | |||||||||||| | ||||||||| ||||| | |||||| |||||||||||||| ||||||| |||||    
T  12750254 taagcgtatttttcagcttgagttaactcacgtagggtgggaatgagcaaaaacagatgggagaagagcaatt 12750326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 322 - 461
Target Start/End: Original strand, 5995128 - 5995267
Alignment:
Q  322 ttcccgttaaaatagccgatcgtgagttaactcacgcatgtgtattttcattgtgagttaactcacatgtgtgtatttttcagcgtcagttaactctcgt 421  Q
    |||||||||||||||   | | |||||||||||||||||||||||||||   |||||||||||| ||| ||||||||||||||||| ||||||||| |||    
T  5995128 ttcccgttaaaatagtacaacatgagttaactcacgcatgtgtattttcgacgtgagttaactcgcatatgtgtatttttcagcgtgagttaactcacgt 5995227  T
Q  422 agagagggaataagcaaaaacagatgagagaagaacaatt 461  Q
     ||    |||| |||||||| ||||| ||||||| |||||    
T  5995228 tgaacatgaatgagcaaaaaaagatgggagaagagcaatt 5995267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 300 - 367
Target Start/End: Original strand, 43846260 - 43846327
Alignment:
Q  300 ttcttccatctggttttattcattcccgttaaaatagccgatcgtgagttaactcacgcatgtgtatt 367  Q
    |||||||||||| |||| |||| |||||||||||||| ||| ||||||||||||||||||||| ||||    
T  43846260 ttcttccatctgtttttgttcactcccgttaaaatagtcgagcgtgagttaactcacgcatgtatatt 43846327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 325 - 461
Target Start/End: Complemental strand, 157612 - 157476
Alignment:
Q  325 ccgttaaaatagccgatcgtgagttaactcacgcatgtgtattttcattgtgagttaactcacatgtgtgtatttttcagcgtcagttaactctcg-tag 423  Q
    |||| |||||||  || ||||| |||||||||||||||| ||||||| | |||||||| |||| |  |||||||||||||||| ||||||||| || |||    
T  157612 ccgtcaaaatagtggaacgtgaattaactcacgcatgtgcattttcaatatgagttaattcacgtaggtgtatttttcagcgtgagttaactcacgttag 157513  T
Q  424 agagggaataagcaaaaacagatgagagaagaacaatt 461  Q
    |  |||||| |||||||| ||||| || |||| |||||    
T  157512 a-tgggaatgagcaaaaatagatgtgaaaagagcaatt 157476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 305 - 406
Target Start/End: Complemental strand, 34072985 - 34072884
Alignment:
Q  305 ccatctggttttattcattcccgttaaaatagccgatcgtgagttaactcacgcatgtgtattttcattgtgagttaactcacatgtgtgtatttttcag 404  Q
    ||||||||||||  |||||||||||||||||| ||| | |||||||||||||| | ||||||| |||  ||||||||||| ||    |||||||||||||    
T  34072985 ccatctggttttgctcattcccgttaaaataggcgagcatgagttaactcacgtaggtgtattctcagcgtgagttaacttacgcaagtgtatttttcag 34072886  T
Q  405 cg 406  Q
    ||    
T  34072885 cg 34072884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 319 - 371
Target Start/End: Complemental strand, 33102144 - 33102092
Alignment:
Q  319 tcattcccgttaaaatagccgatcgtgagttaactcacgcatgtgtattttca 371  Q
    |||||||||| ||||||||||| ||||||||||||||||||  ||||||||||    
T  33102144 tcattcccgtcaaaatagccgagcgtgagttaactcacgcaaatgtattttca 33102092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 357
Target Start/End: Original strand, 22842158 - 22842215
Alignment:
Q  300 ttcttccatctggttttattcattcccgttaaaatagccgatcgtgagttaactcacg 357  Q
    |||| ||||||| ||||  |||||||||| ||||||| ||| ||||||||||||||||    
T  22842158 ttctcccatctgttttttctcattcccgtcaaaatagtcgagcgtgagttaactcacg 22842215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 369
Target Start/End: Complemental strand, 33581910 - 33581841
Alignment:
Q  300 ttcttccatctggttttattcattcccgttaaaatagccgatcgtgagttaactcacgcatgtgtatttt 369  Q
    |||||||||||| ||||  ||||||||   ||||||||| | |||||||||||||||||| | |||||||    
T  33581910 ttcttccatctgattttgctcattcccaacaaaatagcctagcgtgagttaactcacgcaggagtatttt 33581841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 288 - 455
Target Start/End: Complemental strand, 623012 - 622845
Alignment:
Q  288 tgataatttctattcttccatctggttttattcattcccgttaaaatagccgatcgtgagttaactcacgcatgtgtattttcattgtgagttaactcac 387  Q
    |||||||| ||||||| ||||||| ||||  | || ||||| |||||||| || | ||||||||||| ||||||||||||||||  ||||||||||||||    
T  623012 tgataattgctattctcccatctgtttttgcttatccccgtcaaaatagctgagcctgagttaactcgcgcatgtgtattttcagcgtgagttaactcac 622913  T
Q  388 atgtgtgtatttttcagcgtcagttaactctcgtagagagggaataagcaaaaacagatgagagaaga 455  Q
     |  |||||||||||| ||| ||||||||| |||||   |||||| |||||||||| ||| |||||||    
T  622912 gtaggtgtatttttcaacgtgagttaactcacgtaggacgggaatgagcaaaaacaaatgggagaaga 622845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 305 - 417
Target Start/End: Complemental strand, 31847780 - 31847668
Alignment:
Q  305 ccatctggttttattcattcccgttaaaatagccgatcgtgagttaactcacgcatgtgtattttcattgtgagttaactcacatgtgtgtatttttcag 404  Q
    ||||||| || | ||| |||||||||||||||| || | |||||||||||||||| ||| ||||| |  ||||||||||||||||   |||||||||||     
T  31847780 ccatctgtttatgttcgttcccgttaaaatagctgagcatgagttaactcacgcaagtgcatttttaccgtgagttaactcacatagatgtatttttcac 31847681  T
Q  405 cgtcagttaactc 417  Q
     || |||||||||    
T  31847680 tgtgagttaactc 31847668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 319 - 386
Target Start/End: Original strand, 3851733 - 3851798
Alignment:
Q  319 tcattcccgttaaaatagccgatcgtgagttaactcacgcatgtgtattttcattgtgagttaactca 386  Q
    |||| ||||| ||||||||||| ||||||||||||  |||| ||||||||||| ||||||||||||||    
T  3851733 tcatccccgtcaaaatagccgagcgtgagttaact--cgcaagtgtattttcagtgtgagttaactca 3851798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 313 - 416
Target Start/End: Complemental strand, 10609009 - 10608906
Alignment:
Q  313 ttttattcattcccgttaaaatagccgatcgtgagttaactcacgcatgtgtattttcattgtgagttaactcacatgtgtgtatttttcagcgtcagtt 412  Q
    |||| ||| ||||||| |||||| | || ||||||||||||||||||| || ||||| |  |||| |||||| |||| ||||||||||| ||| | ||||    
T  10609009 ttttgttcgttcccgtcaaaataacagagcgtgagttaactcacgcatatgcatttttaacgtgaattaactgacatatgtgtattttttagcatgagtt 10608910  T
Q  413 aact 416  Q
    ||||    
T  10608909 aact 10608906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 300 - 387
Target Start/End: Complemental strand, 21322627 - 21322540
Alignment:
Q  300 ttcttccatctggttttattcattcccgttaaaatagccgatcgtgagttaactcacgcatgtgtattttcattgtgagttaactcac 387  Q
    |||| ||||||| ||||  ||| |||||| |||||||||||  ||||||||||||||||| ||||||| |||  || |||||||||||    
T  21322627 ttctcccatctgtttttgctcaatcccgtcaaaatagccgagggtgagttaactcacgcaggtgtattctcaacgtaagttaactcac 21322540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 343 - 447
Target Start/End: Original strand, 14210655 - 14210759
Alignment:
Q  343 gtgagttaactcacgcatgtgtattttcattgtgagttaactcacatgtgtgtatttttcagcgtcagttaactctcgtagaga-gggaataagcaaaaa 441  Q
    ||||||||||  |||||  || |||||||  ||||||||||||||||  |||||||||||||||| ||||| ||| |||| ||| |||||| ||||||||    
T  14210655 gtgagttaacaaacgcagatgcattttcaacgtgagttaactcacataggtgtatttttcagcgtgagttatctcacgta-agatgggaatgagcaaaaa 14210753  T
Q  442 cagatg 447  Q
     |||||    
T  14210754 tagatg 14210759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 330 - 368
Target Start/End: Complemental strand, 52186940 - 52186902
Alignment:
Q  330 aaaatagccgatcgtgagttaactcacgcatgtgtattt 368  Q
    ||||||||||| |||||||||||||||||| ||||||||    
T  52186940 aaaatagccgagcgtgagttaactcacgcaggtgtattt 52186902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 461
Target Start/End: Complemental strand, 43909065 - 43908996
Alignment:
Q  392 gtgtatttttcagcgtcagttaactctcgtagagagggaataagcaaaaacagatgagagaagaacaatt 461  Q
    |||||||||||||||| || |||||| ||||||   ||||| ||||||||| |||| ||||||| |||||    
T  43909065 gtgtatttttcagcgtgagataactcacgtagaacaggaatgagcaaaaactgatgggagaagagcaatt 43908996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 300 - 336
Target Start/End: Original strand, 30871899 - 30871935
Alignment:
Q  300 ttcttccatctggttttattcattcccgttaaaatag 336  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  30871899 ttctcccatctgtttttattcattcccgttaaaatag 30871935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 342 - 370
Target Start/End: Complemental strand, 32815821 - 32815793
Alignment:
Q  342 cgtgagttaactcacgcatgtgtattttc 370  Q
    |||||||||||||||||||||||||||||    
T  32815821 cgtgagttaactcacgcatgtgtattttc 32815793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 3e-25; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 291 - 450
Target Start/End: Complemental strand, 37442674 - 37442516
Alignment:
Q  291 taatttctattcttccatctggttttattcattcccgttaaaatagccgatcgtgagttaactcacgcatgtgtattttcattgtgagttaactcacatg 390  Q
    ||||| || |||||||||||| ||||  |||||||||| ||| ||||||| |||||||||||||| |||  ||||||||||   ||||||||||||| |     
T  37442674 taattgctcttcttccatctgtttttgctcattcccgtcaaa-tagccgagcgtgagttaactcatgcagatgtattttcaacatgagttaactcacgta 37442576  T
Q  391 tgtgtatttttcagcgtcagttaactctcgtagagagggaataagcaaaaacagatgaga 450  Q
     |||||||||||||||| |||||||||  ||||   |||||| |||||||||||||||||    
T  37442575 ggtgtatttttcagcgtgagttaactcatgtaggacgggaatgagcaaaaacagatgaga 37442516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 287 - 461
Target Start/End: Original strand, 8254695 - 8254868
Alignment:
Q  287 atgataatttctattcttccatctggttttattcattcccgttaaaatagccgatcgtgagttaactcacgcatgtgtattttcattgtgagttaactca 386  Q
    ||||||||| || |||| |||| || ||||| || || |||| |||| |||||| ||| | |||||||||||||||| ||||||| ||||||||||||||    
T  8254695 atgataattgctcttctcccatatgtttttactcgtttccgtaaaaa-agccgaacgtaaattaactcacgcatgtgcattttcagtgtgagttaactca 8254793  T
Q  387 catgtgtgtatttttcagcgtcagttaactctcgtagagagggaata-agcaaaaacagatgagagaagaacaatt 461  Q
    ||| | || |||||||||||| ||||||||| ||| || | | |||| |||||||||| ||||||||||| |||||    
T  8254794 catatatgcatttttcagcgtgagttaactcacgttga-acgaaatagagcaaaaacatatgagagaagagcaatt 8254868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 289 - 461
Target Start/End: Original strand, 9828179 - 9828349
Alignment:
Q  289 gataatttctattcttccatctggttttattcattcccgttaaaatagccgatcgtgagttaactcacgcatgtgtattttcattgtgagttaactcaca 388  Q
    ||||||| || |||| ||||||||||||  |||||||||| ||| |||  || ||||||||||| ||| || |||||||||||   |||||||||||||     
T  9828179 gataattgctcttctcccatctggttttgctcattcccgtcaaa-tagtagagcgtgagttaacccacacaagtgtattttcaga-tgagttaactcacg 9828276  T
Q  389 tgtgtgtatttttcagcgtcagttaactctcgtagagagggaataagcaaaaacagatgagagaagaacaatt 461  Q
    |  |||||||||||||||| |||||| || ||||||| || ||| ||||||||| |||  |||||||||||||    
T  9828277 taggtgtatttttcagcgtgagttaaatcacgtagagcggaaatgagcaaaaactgataggagaagaacaatt 9828349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 289 - 389
Target Start/End: Original strand, 32303607 - 32303707
Alignment:
Q  289 gataatttctattcttccatctggttttattcattcccgttaaaatagccgatcgtgagttaactcacgcatgtgtattttcattgtgagttaactcaca 388  Q
    ||||||| || |||||||||||| ||||  |||||  ||| ||||||| ||| ||||||||||||||||||||||||||||||  |||||||||||||||    
T  32303607 gataattgctcttcttccatctgattttgctcattttcgtcaaaatagtcgagcgtgagttaactcacgcatgtgtattttcagcgtgagttaactcaca 32303706  T
Q  389 t 389  Q
    |    
T  32303707 t 32303707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 322 - 416
Target Start/End: Original strand, 8055187 - 8055283
Alignment:
Q  322 ttcccgttaaaatagccgatcgtgagttaactcacgcatgtgtattttca--ttgtgagttaactcacatgtgtgtatttttcagcgtcagttaact 416  Q
    ||||||||||||||| ||| |||||||||||||  ||||||| |||||||   ||||| ||||||||| |   ||||||||||||||| ||||||||    
T  8055187 ttcccgttaaaatagtcgagcgtgagttaactcgtgcatgtgcattttcaatgtgtgaattaactcacgtagatgtatttttcagcgtgagttaact 8055283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 28228862 - 28228923
Alignment:
Q  345 gagttaactcacgcatgtgtattttcattgtgagttaactcacatgtgtgtatttttcagcg 406  Q
    ||||||||||||||||||||||| |||| ||||||||||| ||   ||||||||| ||||||    
T  28228862 gagttaactcacgcatgtgtattctcatcgtgagttaacttacgcatgtgtatttctcagcg 28228923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 415
Target Start/End: Original strand, 42158282 - 42158354
Alignment:
Q  343 gtgagttaactcacgcatgtgtattttcattgtgagttaactcacatgtgtgtatttttcagcgtcagttaac 415  Q
    |||||||| |||| ||||||||||||| | |||||||||||||| ||   ||||||||||| ||| |||||||    
T  42158282 gtgagttatctcatgcatgtgtatttttaatgtgagttaactcaaataaatgtatttttcaacgtgagttaac 42158354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 342 - 384
Target Start/End: Original strand, 28217977 - 28218019
Alignment:
Q  342 cgtgagttaactcacgcatgtgtattttcattgtgagttaact 384  Q
    |||||||||||||||||| ||||||| |||| |||||||||||    
T  28217977 cgtgagttaactcacgcaggtgtattctcatcgtgagttaact 28218019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 342 - 384
Target Start/End: Complemental strand, 28228874 - 28228832
Alignment:
Q  342 cgtgagttaactcacgcatgtgtattttcattgtgagttaact 384  Q
    ||||||||||||| |||||||||||| |||| |||||||||||    
T  28228874 cgtgagttaactcgcgcatgtgtattctcatcgtgagttaact 28228832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 313 - 443
Target Start/End: Complemental strand, 42924006 - 42923876
Alignment:
Q  313 ttttattcattcccgttaaaatagccgatcgtgagttaactcacgcatgtgtattttcattgtgagttaactcacatgtgtgtatttttcagcgtcagtt 412  Q
    ||||| || ||||| | |||||| |||| |||| ||||||||| ||| ||| |||||||  |||||||||||||    ||| |||||||||||||  |||    
T  42924006 ttttactcgttcccttcaaaataaccgaacgtgtgttaactcatgcaggtgcattttcaacgtgagttaactcatgcatgtatatttttcagcgtgggtt 42923907  T
Q  413 aactctcgtagagagggaataagcaaaaaca 443  Q
    |||||  || ||  |||||| ||||||||||    
T  42923906 aactcatgttgaacgggaatgagcaaaaaca 42923876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 416
Target Start/End: Complemental strand, 32827102 - 32827017
Alignment:
Q  331 aaatagccgatcgtgagttaactcacgcatgtgtattttcattgtgagttaactcacatgtgtgtatttttcagcgtcagttaact 416  Q
    |||||| ||| | ||||||||||||| || |||||||||||  |||||  ||||||  |  |||||||||||||||| ||||||||    
T  32827102 aaatagtcgaacatgagttaactcacacaagtgtattttcaacgtgagaaaactcatgtaggtgtatttttcagcgtgagttaact 32827017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 6e-20; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 289 - 423
Target Start/End: Complemental strand, 33819023 - 33818889
Alignment:
Q  289 gataatttctattcttccatctggttttattcattcccgttaaaatagccgatcgtgagttaactcacgcatgtgtattttcattgtgagttaactcaca 388  Q
    ||||||| || |||||||||||| ||||  |||| ||||| ||| ||| ||| |||||||||||||| ||||||||||||| |  | || ||||||||||    
T  33819023 gataattgcttttcttccatctgtttttgctcatccccgtcaaagtaggcgaacgtgagttaactcatgcatgtgtatttttagcgcgaattaactcaca 33818924  T
Q  389 tgtgtgtatttttcagcgtcagttaactctcgtag 423  Q
     |  ||||||||||||||| ||||||||| |||||    
T  33818923 cgaatgtatttttcagcgtgagttaactcacgtag 33818889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 351 - 464
Target Start/End: Complemental strand, 3557214 - 3557101
Alignment:
Q  351 actcacgcatgtgtattttcattgtgagttaactcacatgtgtgtatttttcagcgtcagttaactctcgtagagagggaataagcaaaaacagatgaga 450  Q
    ||||||| | |||||||||||  |||||||| ||||| |  ||| |||||||||||| ||||||||| |||||   || |||||||||||| | ||| ||    
T  3557214 actcacgtaggtgtattttcaaggtgagttagctcacgtaggtgcatttttcagcgtgagttaactcacgtagcacggtaataagcaaaaataaatggga 3557115  T
Q  451 gaagaacaattatc 464  Q
    ||||||||||||||    
T  3557114 gaagaacaattatc 3557101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 461
Target Start/End: Original strand, 3756404 - 3756546
Alignment:
Q  319 tcattcccgttaaaatagccgatcgtgagttaactcacgcatgtgtattttcattgtgagttaactcacatgtgtgtatttttcagcgtcagttaactct 418  Q
    |||||||||| ||||||| |||  ||||||||||||  ||| ||| ||| |||  |||||||||||||  |  |||||||| | ||||| ||||| | |     
T  3756404 tcattcccgtcaaaatagtcgagtgtgagttaactcgtgcaagtggattctcagcgtgagttaactcatgtaggtgtatttcttagcgtgagttagcaca 3756503  T
Q  419 cgtagagagggaataagcaaaaacagatgagagaagaacaatt 461  Q
    |||||||  ||||| ||||||||||| || ||||||| |||||    
T  3756504 cgtagagcaggaatgagcaaaaacaggtgggagaagagcaatt 3756546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 329 - 461
Target Start/End: Complemental strand, 5758913 - 5758781
Alignment:
Q  329 taaaatagccgatcgtgagttaactcacgcatgtgtattttcattgtgagttaactcacatgtgtgtatttttcagcgtcagttaactctcgtagagagg 428  Q
    ||||| || ||| ||||| |||||||||| | ||||||||| |  || ||||||||||  |  ||| |||||||||||| ||||||||  |||||   ||    
T  5758913 taaaaaagtcgaacgtgatttaactcacgtaggtgtatttttaacgtaagttaactcatgtaagtgcatttttcagcgtgagttaactaacgtagcacgg 5758814  T
Q  429 gaataagcaaaaacagatgagagaagaacaatt 461  Q
    |||| |||||||||| | | ||||||| |||||    
T  5758813 gaatgagcaaaaacaaaagggagaagagcaatt 5758781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 24411960 - 24411904
Alignment:
Q  60 tttttggatgttaggccttcacctagacatgtatcatttaaggacacttgtaatgat 116  Q
    |||||||  ||||| ||||||||||||||||| || | ||||||| |||||||||||    
T  24411960 tttttggccgttagaccttcacctagacatgtgtcttctaaggacgcttgtaatgat 24411904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 342 - 417
Target Start/End: Complemental strand, 7095657 - 7095582
Alignment:
Q  342 cgtgagttaactcacgcatgtgtattttcattgtgagttaactcacatgtgtgtatttttcagcgtcagttaactc 417  Q
    |||||||||||||||||| ||||||||||| ||| |||||||||||||  ||||||||||||| || |||||||||    
T  7095657 cgtgagttaactcacgcaagtgtattttcaatgtaagttaactcacataagtgtatttttcagtgtgagttaactc 7095582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 319 - 417
Target Start/End: Original strand, 36138962 - 36139060
Alignment:
Q  319 tcattcccgttaaaatagccgatcgtgagttaactcacgcatgtgtattttcattgtgagttaactcacatgtgtgtatttttcagcgtcagttaactc 417  Q
    |||||| ||| ||||||  ||| |||||||||||||||||||||| |||||||  |||||||||||||  | |||| |||||||||||| |||||||||    
T  36138962 tcattctcgtcaaaataagcgaacgtgagttaactcacgcatgtgcattttcaacgtgagttaactcatgtatgtgaatttttcagcgtgagttaactc 36139060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 305 - 386
Target Start/End: Original strand, 53979029 - 53979110
Alignment:
Q  305 ccatctggttttattcattcccgttaaaatagccgatcgtgagttaactcacgcatgtgtattttcattgtgagttaactca 386  Q
    ||||||| ||||  ||||||| |||||||||| ||| ||||||||||||||| ||||||||||||||  |||||||||||||    
T  53979029 ccatctgtttttgctcattcctgttaaaatagtcgaacgtgagttaactcacacatgtgtattttcagcgtgagttaactca 53979110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 313 - 389
Target Start/End: Complemental strand, 684273 - 684197
Alignment:
Q  313 ttttattcattcccgttaaaatagccgatcgtgagttaactcacgcatgtgtattttcattgtgagttaactcacat 389  Q
    |||| ||||||||||||||||||| ||| | ||||||||||||||||  |||||| |||| |||| |||||||||||    
T  684273 ttttgttcattcccgttaaaatagtcgagcatgagttaactcacgcagatgtattctcatcgtgaattaactcacat 684197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 305 - 382
Target Start/End: Complemental strand, 52450226 - 52450149
Alignment:
Q  305 ccatctggttttattcattcccgttaaaatagccgatcgtgagttaactcacgcatgtgtattttcattgtgagttaa 382  Q
    ||||||| ||||| |||||||||| ||||||||||| |||||||||||||| |||  | ||||||||  |||||||||    
T  52450226 ccatctgtttttactcattcccgtcaaaatagccgagcgtgagttaactcaagcagttatattttcaacgtgagttaa 52450149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 331 - 423
Target Start/End: Original strand, 50136509 - 50136601
Alignment:
Q  331 aaatagccgatcgtgagttaactcacgcatgtgtattttcattgtgagttaactcacatgtgtgtatttttcagcgtcagttaactctcgtag 423  Q
    |||||||||| ||| ||||| |   |||| ||||||||||| | |||||||||||||||  ||||||||||||| || ||||||||| |||||    
T  50136509 aaatagccgagcgtaagttatcatgcgcaggtgtattttcagtttgagttaactcacataggtgtatttttcagtgtgagttaactcacgtag 50136601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 330 - 417
Target Start/End: Complemental strand, 37182292 - 37182205
Alignment:
Q  330 aaaatagccgatcgtgagttaactcacgcatgtgtattttcattgtgagttaactcacatgtgtgtatttttcagcgtcagttaactc 417  Q
    |||||| |||| ||| ||||||||||| |||||| |||||||  |||||||||||||| |  |||||||||||| | | |||||||||    
T  37182292 aaaataaccgagcgtaagttaactcacacatgtgcattttcaacgtgagttaactcacgtaggtgtatttttcaacttgagttaactc 37182205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 342 - 461
Target Start/End: Original strand, 42096747 - 42096866
Alignment:
Q  342 cgtgagttaactcacgcatgtgtattttcattgtgagttaactcacatgtgtgtatttttcagcgtcagttaactctcgtagagagggaataagcaaaaa 441  Q
    |||||||||||||||| |  |  |||||||  ||||||||||||||||  ||| |||||||||||| ||||||||| ||| |    ||||| ||||||||    
T  42096747 cgtgagttaactcacgtagatacattttcaacgtgagttaactcacataggtgcatttttcagcgtgagttaactcacgttggataggaatgagcaaaaa 42096846  T
Q  442 cagatgagagaagaacaatt 461  Q
     ||||| ||||||| |||||    
T  42096847 tagatgggagaagagcaatt 42096866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 417
Target Start/End: Original strand, 17399627 - 17399731
Alignment:
Q  313 ttttattcattcccgttaaaatagccgatcgtgagttaactcacgcatgtgtattttcattgtgagttaactcacatgtgtgtatttttcagcgtcagtt 412  Q
    ||||| || |||| || ||||||||| | |||||||||||| ||||| ||| ||||| | ||||||||||||| |||  |||  |||||||||||  |||    
T  17399627 ttttactcgttcctgtcaaaatagcctagcgtgagttaactaacgcaagtgcatttttaatgtgagttaactctcataagtgattttttcagcgtgggtt 17399726  T
Q  413 aactc 417  Q
    |||||    
T  17399727 aactc 17399731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 300 - 368
Target Start/End: Complemental strand, 29405193 - 29405125
Alignment:
Q  300 ttcttccatctggttttattcattcccgttaaaatagccgatcgtgagttaactcacgcatgtgtattt 368  Q
    |||| |||| || |||| |||||| |||| ||||||||||| ||||||| ||||||| |||||||||||    
T  29405193 ttctcccatatgattttgttcatttccgtcaaaatagccgagcgtgagtgaactcacacatgtgtattt 29405125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 417
Target Start/End: Original strand, 30211942 - 30212030
Alignment:
Q  329 taaaatagccgatcgtgagttaactcacgcatgtgtattttcattgtgagttaactcacatgtgtgtatttttcagcgtcagttaactc 417  Q
    ||||||| |||| | ||||||||||||| |||||| |||||||  |||||||||||||| |  ||| ||||| ||| || |||||||||    
T  30211942 taaaataaccgagcatgagttaactcacacatgtgcattttcaacgtgagttaactcacgtaggtgcattttccagtgtgagttaactc 30212030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 380
Target Start/End: Original strand, 16962841 - 16962908
Alignment:
Q  313 ttttattcattcccgttaaaatagccgatcgtgagttaactcacgcatgtgtattttcattgtgagtt 380  Q
    |||||||||||||  | ||||||| ||| |||||||||||||||| |  |||||||||| ||||||||    
T  16962841 ttttattcattcctatcaaaatagtcgagcgtgagttaactcacgtagatgtattttcagtgtgagtt 16962908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 407
Target Start/End: Original strand, 55301391 - 55301454
Alignment:
Q  344 tgagttaactcacgcatgtgtattttcattgtgagttaactcacatgtgtgtatttttcagcgt 407  Q
    ||||||| |||||||||||  |||||||  ||||||| ||||||||  ||||||||||||||||    
T  55301391 tgagttagctcacgcatgtacattttcaacgtgagttgactcacataagtgtatttttcagcgt 55301454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 386
Target Start/End: Complemental strand, 56211020 - 56210954
Alignment:
Q  319 tcattcccgttaaaatagccgatcgtgagttaactcacgcatgtgtattttcattgtgagttaactca 386  Q
    ||||| |||| |||||||| || ||||||||||||||| | ||||||||||||  |||||||||||||    
T  56211020 tcatttccgtcaaaatagctga-cgtgagttaactcacacgtgtgtattttcaacgtgagttaactca 56210954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 300 - 406
Target Start/End: Original strand, 42747089 - 42747194
Alignment:
Q  300 ttcttccatctggttttattcattcccgttaaaatagccgatcgtgagttaactcacgcatgtgtattttcattgtgagttaactcacatgtgtgtattt 399  Q
    |||||||||||| ||||  | |||||||| |||||||  || |||  ||||||||||||| ||||||| |||  ||||||||||||||   |||||||||    
T  42747089 ttcttccatctgtttttgctaattcccgtcaaaatagtagagcgtc-gttaactcacgcaggtgtattctcagcgtgagttaactcacgcatgtgtattt 42747187  T
Q  400 ttcagcg 406  Q
     ||||||    
T  42747188 ctcagcg 42747194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 415
Target Start/End: Original strand, 47583504 - 47583629
Alignment:
Q  290 ataatttctattcttccatctggttttattcattcccgttaaaatagccgatcgtgagttaactcacgcatgtgtattttcattgtgagttaactcacat 389  Q
    |||||| || |||||| |||||| |||   ||||| ||| ||| |||| || ||||||||||||||||||| |||||||| | ||| |||||| |||  |    
T  47583504 ataattactcttcttctatctggatttgcacattctcgtcaaattagcggagcgtgagttaactcacgcatatgtatttttaatgtaagttaattcatgt 47583603  T
Q  390 gtgtgtatttttcagcgtcagttaac 415  Q
       ||||||||||||||  |||||||    
T  47583604 agatgtatttttcagcgcaagttaac 47583629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 300 - 387
Target Start/End: Original strand, 13387327 - 13387414
Alignment:
Q  300 ttcttccatctggttttattcattcccgttaaaatagccgatcgtgagttaactcacgcatgtgtattttcattgtgagttaactcac 387  Q
    |||| ||||||| |||| ||||||||||| ||||||| | | |||||||||||||||| ||||||||||||||  |||||||||||||    
T  13387327 ttctcccatctgtttttcttcattcccgtcaaaatagtcaagcgtgagttaactcacgtatgtgtattttcatcatgagttaactcac 13387414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 289 - 407
Target Start/End: Complemental strand, 33833519 - 33833402
Alignment:
Q  289 gataatttctattcttccatctggttttattcattcccgttaaaatagccgatcgtgagttaactcacgcatgtgtattttcattgtgagttaactcaca 388  Q
    ||||||| || |||| ||||||| ||||| ||||||| || ||| ||||||| |||| ||||||||| ||| ||||||||| |  |||||||||||||||    
T  33833519 gataattgctcttctcccatctgtttttactcattcctgtcaaa-tagccgagcgtgggttaactcatgcaggtgtatttttaacgtgagttaactcaca 33833421  T
Q  389 tgtgtgtatttttcagcgt 407  Q
    | ||||||||||| |||||    
T  33833420 tatgtgtattttttagcgt 33833402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 288 - 461
Target Start/End: Complemental strand, 39556087 - 39555916
Alignment:
Q  288 tgataatttctattcttccatctggttttattcattcccgttaaaatagccgatcgtgagttaactcacgcatgtgtattttcattgtgagttaactcac 387  Q
    |||||||| || |||| | ||||| ||||  |||||||||| ||| ||| |||  ||||||||||||||||||||||| ||| |  ||||||| ||||||    
T  39556087 tgataattgcttttctcctatctgattttgctcattcccgtcaaa-tagtcgagtgtgagttaactcacgcatgtgtaattttaaagtgagttgactcac 39555989  T
Q  388 atgtgtgtatttttcagcgtcagttaactctcgtagagagggaataagcaaaaacagatgagagaagaacaatt 461  Q
     |  |||||||||| ||||| ||||||||| |||||     |||| | |||||||||||| |||||||||||||    
T  39555988 gtaggtgtattttt-agcgtaagttaactcacgtaggacatgaatgaacaaaaacagatgtgagaagaacaatt 39555916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 300 - 405
Target Start/End: Original strand, 17793883 - 17793987
Alignment:
Q  300 ttcttccatctggttttattcattcccgttaaaatagccgatcgtgagttaactcacgcatgtgtattttcattgtgagttaactcacatgtgtgtattt 399  Q
    ||||||||| || ||||||||||| |||||||| ||| ||| ||| ||||||||||   ||||||||||| |  ||||||||||| | ||  ||||||||    
T  17793883 ttcttccatatgtttttattcatttccgttaaa-tagtcgagcgtaagttaactcatatatgtgtattttaagcgtgagttaacttatataggtgtattt 17793981  T
Q  400 ttcagc 405  Q
    ||||||    
T  17793982 ttcagc 17793987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 331 - 416
Target Start/End: Original strand, 17793993 - 17794078
Alignment:
Q  331 aaatagccgatcgtgagttaactcacgcatgtgtattttcattgtgagttaactcacatgtgtgtatttttcagcgtcagttaact 416  Q
    |||||| ||| ||| |||||| ||| ||| |||||||||||  ||||||||||| | ||  |||||||||||||||| ||||||||    
T  17793993 aaatagtcgaacgtaagttaattcatgcaggtgtattttcagcgtgagttaacttatataggtgtatttttcagcgtaagttaact 17794078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 342 - 387
Target Start/End: Original strand, 44069893 - 44069938
Alignment:
Q  342 cgtgagttaactcacgcatgtgtattttcattgtgagttaactcac 387  Q
    |||||||||||||||||| |||||||||||  ||||||||||||||    
T  44069893 cgtgagttaactcacgcaggtgtattttcaacgtgagttaactcac 44069938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 40410326 - 40410191
Alignment:
Q  1 gtaaagagtgagatacctgacccaacactatgcaataatatttatagagaatgagtagg-tttttggatgttaggccttcacctagacatgtatcattta 99  Q
    |||||||||||||||| ||||| || | | || |  ||||||||||| ||||||||||| ||||||| ||| ||| |||||||| ||||  | || |  |    
T  40410326 gtaaagagtgagatacatgaccgaatattgtgtataaatatttatagggaatgagtaggatttttggttgtcaggtcttcacctggacaaatgtcctcaa 40410227  T
Q  100 aggacacttgtaatgatctggagacaatcacatcat 135  Q
     ||||||||||||| |||||| || | |||||||||    
T  40410226 gggacacttgtaataatctggtgatagtcacatcat 40410191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 373 - 455
Target Start/End: Original strand, 8514002 - 8514084
Alignment:
Q  373 tgtgagttaactcacatgtgtgtatttttcagcgtcagttaactctcgtagagagggaataagcaaaaacagatgagagaaga 455  Q
    ||||||||||||||| |  |||||||||||| ||| | ||||||| |||||   || ||| |||||||||||||| |||||||    
T  8514002 tgtgagttaactcacgtaggtgtatttttcaacgtaatttaactcacgtagtacggaaatgagcaaaaacagatgggagaaga 8514084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 300 - 405
Target Start/End: Complemental strand, 32016537 - 32016431
Alignment:
Q  300 ttcttccatctggttttattcattcccgttaaaatagccgatcgtgagttaa-ctcacgcatgtgtattttcattgtgagttaactcacatgtgtgtatt 398  Q
    |||| ||||||  ||||| || ||||| | ||||||| | | |||||||||| |||||||| ||||||||| |  |||||||||||||| |  |||||||    
T  32016537 ttctcccatctatttttactcgttcccatcaaaatagtccagcgtgagttaaactcacgcaggtgtatttttaacgtgagttaactcacgtaggtgtatt 32016438  T
Q  399 tttcagc 405  Q
    |||||||    
T  32016437 tttcagc 32016431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 321 - 387
Target Start/End: Original strand, 44540691 - 44540757
Alignment:
Q  321 attcccgttaaaatagccgatcgtgagttaactcacgcatgtgtattttcattgtgagttaactcac 387  Q
    |||||||| ||||||| |||  | ||||||| ||||||||||||||| |||  ||||||||||||||    
T  44540691 attcccgtcaaaatagtcgagagcgagttaattcacgcatgtgtattctcaacgtgagttaactcac 44540757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 319 - 387
Target Start/End: Original strand, 6620032 - 6620100
Alignment:
Q  319 tcattcccgttaaaatagccgatcgtgagttaactcacgcatgtgtattttcattgtgagttaactcac 387  Q
    |||||||||| |||||||  || |||||||||||||| ||| ||||||| ||  | |||||||||||||    
T  6620032 tcattcccgtcaaaatagttgagcgtgagttaactcatgcaggtgtattctctgtatgagttaactcac 6620100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 374 - 470
Target Start/End: Original strand, 13387370 - 13387465
Alignment:
Q  374 gtgagttaactcacatgtgtgtatttttcagcgtcagttaactctcgtagagagggaataagcaaaaacagatgagagaagaacaattatcgaatat 470  Q
    |||||||||||||| | |||||||||| || | | ||||||||| |||||   | |||| | |||||| ||||||||||||||||||| || |||||    
T  13387370 gtgagttaactcacgtatgtgtatttt-catcatgagttaactcacgtaggacgagaatgaacaaaaatagatgagagaagaacaattctccaatat 13387465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 427 - 455
Target Start/End: Complemental strand, 44540696 - 44540668
Alignment:
Q  427 gggaataagcaaaaacagatgagagaaga 455  Q
    |||||||||||||||||||||||||||||    
T  44540696 gggaataagcaaaaacagatgagagaaga 44540668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 319 - 387
Target Start/End: Complemental strand, 35310469 - 35310401
Alignment:
Q  319 tcattcccgttaaaatagccgatcgtgagttaactcacgcatgtgtattttcattgtgagttaactcac 387  Q
    |||| ||||| ||||||||||| ||||||||||||||| || ||||||| ||| |||||||||||||||    
T  35310469 tcatccccgtcaaaatagccgagcgtgagttaactcacacaggtgtattctcagtgtgagttaactcac 35310401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 319 - 387
Target Start/End: Original strand, 20991581 - 20991649
Alignment:
Q  319 tcattcccgttaaaatagccgatcgtgagttaactcacgcatgtgtattttcattgtgagttaactcac 387  Q
    |||||||||| ||||||||||| ||||||||||| ||| || ||||||| |||  ||||||||||||||    
T  20991581 tcattcccgtcaaaatagccgagcgtgagttaacccacacaggtgtattgtcagcgtgagttaactcac 20991649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 384
Target Start/End: Complemental strand, 18360206 - 18360113
Alignment:
Q  289 gataatttctattcttccatctggttttattcattcccgttaaaatagccgatcgtgagttaactcacgcatgtgtattttcattgtgagttaact 384  Q
    ||||||| || |||| | ||||||||||  |||||||||| |||| ||| |   ||||||||||||||||| |||||||||||  |||||||||||    
T  18360206 gataattgctcttctcctatctggttttgatcattcccgtcaaaacagcagt--gtgagttaactcacgcaggtgtattttcagcgtgagttaact 18360113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 464
Target Start/End: Complemental strand, 18360155 - 18360065
Alignment:
Q  373 tgtgagttaactcacatgtgtgtatttttcagcgtcagttaactctcgtagagagggaataagcaaaaacagatgagagaagaacaattatc 464  Q
    |||||||||||||||    ||||||||| |||||| ||||||||  |||| |  | |||| |||||||||||||||||||||| ||||||||    
T  18360155 tgtgagttaactcacgcaggtgtatttt-cagcgtgagttaacttacgtaaaacgagaatgagcaaaaacagatgagagaagagcaattatc 18360065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 19630690 - 19630606
Alignment:
Q  39 tatttatagagaatgagtaggtttttgga-tgttaggccttcacctagacatgtatcatttaaggacacttgtaatgatctggag 122  Q
    ||||||| ||||||||||||| |||  || |||||||||||||||| ||||  | || |  ||||||||||||| ||||||||||    
T  19630690 tatttatcgagaatgagtaggctttatgactgttaggccttcaccttgacagttgtcctcaaaggacacttgtattgatctggag 19630606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 19654951 - 19654867
Alignment:
Q  39 tatttatagagaatgagta-ggtttttggatgttaggccttcacctagacatgtatcatttaaggacacttgtaatgatctggag 122  Q
    ||||||| ||||||||||| ||||| ||  ||| |||||||||||| ||||| | || |  ||||||||||||| ||||||||||    
T  19654951 tatttatcgagaatgagtaaggtttatgactgtcaggccttcaccttgacatatgtcttcaaaggacacttgtattgatctggag 19654867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 307 - 387
Target Start/End: Complemental strand, 130792 - 130712
Alignment:
Q  307 atctggttttattcattcccgttaaaatagccgatcgtgagttaactcacgcatgtgta-ttttcattgtgagttaactcac 387  Q
    ||||| |||| ||||||||||| ||| || |||| |||||||||||||||||| ||||| |||||| |||||||||||||||    
T  130792 atctgtttttgttcattcccgtcaaa-taaccgaacgtgagttaactcacgcaggtgtatttttcagtgtgagttaactcac 130712  T

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Target: scaffold0580 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: scaffold0580
Description:

Target: scaffold0580; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 1365 - 1230
Alignment:
Q  1 gtaaagagtgagatacctgacccaacactatgcaataatatttatagagaatgagta-ggtttttggatgttaggccttcacctagacatgtatcattta 99  Q
    |||||||||||||||| |||||||||| | || |  ||||||||||| ||||||||| | ||||||| ||| ||| |||||||| ||||  | || ||      
T  1365 gtaaagagtgagatacatgacccaacattgtgtataaatatttatagggaatgagtatgatttttggttgtcaggtcttcacctggacaaatgtccttat 1266  T
Q  100 aggacacttgtaatgatctggagacaatcacatcat 135  Q
     ||||||||||||| |||||| || | |||||||||    
T  1265 gggacacttgtaataatctggtgatagtcacatcat 1230  T

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Target: scaffold0580; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 9104 - 8969
Alignment:
Q  1 gtaaagagtgagatacctgacccaacactatgcaataatatttatagagaatgagta-ggtttttggatgttaggccttcacctagacatgtatcattta 99  Q
    |||||||||||||||| |||||||||| | || |  ||||||||||| ||||||||| | ||||||| ||| ||| |||||||| ||||  | || ||      
T  9104 gtaaagagtgagatacatgacccaacattgtgtataaatatttatagggaatgagtatgatttttggttgtcaggtcttcacctggacaaatgtccttat 9005  T
Q  100 aggacacttgtaatgatctggagacaatcacatcat 135  Q
     ||||||||||||| |||||| || | |||||||||    
T  9004 gggacacttgtaataatctggtgatagtcacatcat 8969  T

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Target: scaffold0254 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 331 - 424
Target Start/End: Original strand, 23231 - 23324
Alignment:
Q  331 aaatagccgatcgtgagttaactcacgcatgtgtattttcattgtgagttaactcacatgtgtgtatttttcagcgtcagttaactctcgtaga 424  Q
    ||||||| || ||||||| |||||||||||||||| |||||  ||||||||||| || |  |||| ||||||| ||| | ||||||| ||||||    
T  23231 aaatagcagagcgtgagtgaactcacgcatgtgtaatttcaacgtgagttaacttacgtaggtgtgtttttcaacgtgaattaactcacgtaga 23324  T

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