View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10174_low_20 (Length: 375)

Name: NF10174_low_20
Description: NF10174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10174_low_20
NF10174_low_20
[»] chr3 (6 HSPs)
chr3 (260-321)||(6411871-6411932)
chr3 (259-321)||(47624087-47624149)
chr3 (260-321)||(22609812-22609873)
chr3 (260-321)||(40272861-40272923)
chr3 (260-321)||(26869753-26869814)
chr3 (276-321)||(54484754-54484799)
[»] chr5 (4 HSPs)
chr5 (17-69)||(39696499-39696551)
chr5 (260-321)||(19142992-19143053)
chr5 (260-321)||(41014343-41014404)
chr5 (102-168)||(39696403-39696467)
[»] chr7 (10 HSPs)
chr7 (260-321)||(11617637-11617699)
chr7 (260-321)||(33871959-33872020)
chr7 (259-311)||(6736913-6736965)
chr7 (260-321)||(7879662-7879724)
chr7 (260-321)||(23419723-23419785)
chr7 (260-317)||(32233188-32233245)
chr7 (260-321)||(38604551-38604612)
chr7 (260-321)||(48735171-48735231)
chr7 (277-321)||(42476913-42476957)
chr7 (276-320)||(42798710-42798754)
[»] chr2 (3 HSPs)
chr2 (260-321)||(32781337-32781399)
chr2 (260-321)||(12023968-12024029)
chr2 (260-321)||(36871517-36871578)
[»] scaffold0258 (1 HSPs)
scaffold0258 (260-321)||(13073-13134)
[»] chr8 (5 HSPs)
chr8 (276-321)||(2626563-2626608)
chr8 (260-321)||(13160726-13160787)
chr8 (260-321)||(45071289-45071350)
chr8 (260-321)||(44530173-44530235)
chr8 (260-321)||(12625913-12625976)
[»] chr4 (6 HSPs)
chr4 (260-321)||(5648283-5648344)
chr4 (260-317)||(40915853-40915910)
chr4 (260-319)||(6430677-6430736)
chr4 (260-321)||(20225008-20225068)
chr4 (260-321)||(49796822-49796883)
chr4 (257-321)||(54175085-54175150)
[»] chr1 (5 HSPs)
chr1 (260-321)||(11596560-11596621)
chr1 (260-321)||(32632606-32632667)
chr1 (260-321)||(46248002-46248064)
chr1 (260-321)||(31382263-31382324)
chr1 (276-321)||(41319855-41319900)
[»] scaffold0057 (1 HSPs)
scaffold0057 (277-321)||(43699-43743)


Alignment Details
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 321
Target Start/End: Complemental strand, 6411932 - 6411871
Alignment:
Q  260 aaacaacctcttgagtaaaaacaaggtaagacatcgtacaatacaccaaatgatgggacccc 321  Q
    ||||| ||||||| ||||||||| |||||| |  ||||||||||||||||||||||||||||    
T  6411932 aaacagcctcttgtgtaaaaacagggtaaggctgcgtacaatacaccaaatgatgggacccc 6411871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 321
Target Start/End: Original strand, 47624087 - 47624149
Alignment:
Q  259 aaaacaacctcttgagtaaaaacaaggtaagacatcgtacaatacaccaaatgatgggacccc 321  Q
    |||||| ||||||| ||||||||| |||||| |  |||||||||||||||||| |||||||||    
T  47624087 aaaacagcctcttgtgtaaaaacagggtaaggctgcgtacaatacaccaaatggtgggacccc 47624149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 321
Target Start/End: Original strand, 22609812 - 22609873
Alignment:
Q  260 aaacaacctcttgagtaaaaacaaggtaagacatcgtacaatacaccaaatgatgggacccc 321  Q
    ||||| ||||||| ||||||||| |||||| |  |||||||||||||||||| |||||||||    
T  22609812 aaacagcctcttgtgtaaaaacagggtaaggctgcgtacaatacaccaaatggtgggacccc 22609873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 321
Target Start/End: Complemental strand, 40272923 - 40272861
Alignment:
Q  260 aaacaacctcttgagtaaaaa-caaggtaagacatcgtacaatacaccaaatgatgggacccc 321  Q
    ||||||||||||| ||||||| || |||||| |  |||||||||||||||||| |||||||||    
T  40272923 aaacaacctcttgtgtaaaaaacagggtaaggctgcgtacaatacaccaaatggtgggacccc 40272861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 321
Target Start/End: Original strand, 26869753 - 26869814
Alignment:
Q  260 aaacaacctcttgagtaaaaacaaggtaagacatcgtacaatacaccaaatgatgggacccc 321  Q
    ||||| ||||| | ||||||||| |||||| |  |||||||||||||||||| |||||||||    
T  26869753 aaacagcctctggtgtaaaaacagggtaaggctgcgtacaatacaccaaatggtgggacccc 26869814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 321
Target Start/End: Original strand, 54484754 - 54484799
Alignment:
Q  276 aaaaacaaggtaagacatcgtacaatacaccaaatgatgggacccc 321  Q
    |||||||||||||| |  |||||||||||||||||| |||||||||    
T  54484754 aaaaacaaggtaaggctgcgtacaatacaccaaatggtgggacccc 54484799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 39696551 - 39696499
Alignment:
Q  17 tattgtttggaatctgttccaggcttgcagccaaactgtaggcacagcatcat 69  Q
    |||| ||||||||||||| ||||||||||||||||||||| | ||||||||||    
T  39696551 tattatttggaatctgttacaggcttgcagccaaactgtatgtacagcatcat 39696499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 321
Target Start/End: Complemental strand, 19143053 - 19142992
Alignment:
Q  260 aaacaacctcttgagtaaaaacaaggtaagacatcgtacaatacaccaaatgatgggacccc 321  Q
    ||||||||||||| ||||||||| |||||| |  |||||| ||||||||||| |||||||||    
T  19143053 aaacaacctcttgtgtaaaaacagggtaaggctgcgtacagtacaccaaatggtgggacccc 19142992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 321
Target Start/End: Original strand, 41014343 - 41014404
Alignment:
Q  260 aaacaacctcttgagtaaaaacaaggtaagacatcgtacaatacaccaaatgatgggacccc 321  Q
    ||||| ||||||| ||||||||| |||||| |  |||||||||||||||||| |||||||||    
T  41014343 aaacagcctcttgtgtaaaaacagggtaaggctgcgtacaatacaccaaatggtgggacccc 41014404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 102 - 168
Target Start/End: Complemental strand, 39696467 - 39696403
Alignment:
Q  102 aattatctcggggtttgttgtgtgtcaaaatgctgcactcaaaccgacatgttatgtatgggtggag 168  Q
    |||||||| |||||||||| ||||||||  |||||||||||||||||  || ||| |||||||||||    
T  39696467 aattatcttggggtttgttatgtgtcaa--tgctgcactcaaaccgatgtgctatatatgggtggag 39696403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 321
Target Start/End: Complemental strand, 11617699 - 11617637
Alignment:
Q  260 aaacaacctcttgagtaaaaa-caaggtaagacatcgtacaatacaccaaatgatgggacccc 321  Q
    ||||||||||||| ||||||| || ||||||||  |||||||||||||||||| |||||||||    
T  11617699 aaacaacctcttgtgtaaaaaacagggtaagactgcgtacaatacaccaaatggtgggacccc 11617637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 321
Target Start/End: Complemental strand, 33872020 - 33871959
Alignment:
Q  260 aaacaacctcttgagtaaaaacaaggtaagacatcgtacaatacaccaaatgatgggacccc 321  Q
    ||||||||||||| ||||||||| | |||| |  |||||||||||||||||| |||||||||    
T  33872020 aaacaacctcttgtgtaaaaacaggataaggctgcgtacaatacaccaaatggtgggacccc 33871959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 311
Target Start/End: Original strand, 6736913 - 6736965
Alignment:
Q  259 aaaacaacctcttgagtaaaaacaaggtaagacatcgtacaatacaccaaatg 311  Q
    ||||||||||||||  |||||||||||||||||  | ||||||||||||||||    
T  6736913 aaaacaacctcttgtataaaaacaaggtaagactgcatacaatacaccaaatg 6736965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 321
Target Start/End: Original strand, 7879662 - 7879724
Alignment:
Q  260 aaacaacctcttgagtaaaa-acaaggtaagacatcgtacaatacaccaaatgatgggacccc 321  Q
    |||||| |||||| |||||| |||||||||| |  |||||||||||||||||| |||||||||    
T  7879662 aaacaatctcttgtgtaaaaaacaaggtaaggctgcgtacaatacaccaaatggtgggacccc 7879724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 321
Target Start/End: Complemental strand, 23419785 - 23419723
Alignment:
Q  260 aaacaacctcttgagtaaaaa-caaggtaagacatcgtacaatacaccaaatgatgggacccc 321  Q
    ||||| ||||||| ||||||| || ||||||||  |||||||||||||||||| |||||||||    
T  23419785 aaacagcctcttgtgtaaaaaacagggtaagactgcgtacaatacaccaaatggtgggacccc 23419723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 317
Target Start/End: Complemental strand, 32233245 - 32233188
Alignment:
Q  260 aaacaacctcttgagtaaaaacaaggtaagacatcgtacaatacaccaaatgatggga 317  Q
    ||||||||||||| ||||||||| |||||| || |||| | ||||||||||| |||||    
T  32233245 aaacaacctcttgtgtaaaaacagggtaaggcagcgtatattacaccaaatggtggga 32233188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 321
Target Start/End: Original strand, 38604551 - 38604612
Alignment:
Q  260 aaacaacctcttgagtaaaaacaaggtaagacatcgtacaatacaccaaatgatgggacccc 321  Q
    ||||| ||||||| ||||||||| |||||| |  |||||||||||||||||| || ||||||    
T  38604551 aaacagcctcttgtgtaaaaacagggtaaggctgcgtacaatacaccaaatggtgagacccc 38604612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 321
Target Start/End: Complemental strand, 48735231 - 48735171
Alignment:
Q  260 aaacaacctcttgagtaaaaacaaggtaagacatcgtacaatacaccaaatgatgggacccc 321  Q
    ||||||||||||| |||||| || |||||| |  |||||||||||||||||| |||||||||    
T  48735231 aaacaacctcttgtgtaaaa-cacggtaaggctgcgtacaatacaccaaatggtgggacccc 48735171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 321
Target Start/End: Original strand, 42476913 - 42476957
Alignment:
Q  277 aaaacaaggtaagacatcgtacaatacaccaaatgatgggacccc 321  Q
    ||||||||||||| |  |||||||||||||||||| |||||||||    
T  42476913 aaaacaaggtaaggctgcgtacaatacaccaaatggtgggacccc 42476957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 320
Target Start/End: Original strand, 42798710 - 42798754
Alignment:
Q  276 aaaaacaaggtaagacatcgtacaatacaccaaatgatgggaccc 320  Q
    |||||||||||||| |  |||||||||||||||||| ||||||||    
T  42798710 aaaaacaaggtaaggctgcgtacaatacaccaaatggtgggaccc 42798754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 321
Target Start/End: Complemental strand, 32781399 - 32781337
Alignment:
Q  260 aaacaacctcttgagtaaaaa-caaggtaagacatcgtacaatacaccaaatgatgggacccc 321  Q
    ||||||||||||| ||||||| || ||||||||  |||||||||||||||||| |||||||||    
T  32781399 aaacaacctcttgtgtaaaaaacagggtaagactgcgtacaatacaccaaatggtgggacccc 32781337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 321
Target Start/End: Complemental strand, 12024029 - 12023968
Alignment:
Q  260 aaacaacctcttgagtaaaaacaaggtaagacatcgtacaatacaccaaatgatgggacccc 321  Q
    ||||| ||||||| ||||||||| |||||| |  |||||||||||||||||| |||||||||    
T  12024029 aaacagcctcttgtgtaaaaacagggtaaggctgcgtacaatacaccaaatggtgggacccc 12023968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 321
Target Start/End: Original strand, 36871517 - 36871578
Alignment:
Q  260 aaacaacctcttgagtaaaaacaaggtaagacatcgtacaatacaccaaatgatgggacccc 321  Q
    ||||| ||||||| || |||||| |||||| |  |||||||||||||||||| |||||||||    
T  36871517 aaacagcctcttgtgtgaaaacagggtaaggctgcgtacaatacaccaaatggtgggacccc 36871578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 321
Target Start/End: Complemental strand, 13134 - 13073
Alignment:
Q  260 aaacaacctcttgagtaaaaacaaggtaagacatcgtacaatacaccaaatgatgggacccc 321  Q
    ||||| ||||||| |||||||||||||||| |  ||||||||||||| |||| |||||||||    
T  13134 aaacagcctcttgcgtaaaaacaaggtaaggctgcgtacaatacaccgaatggtgggacccc 13073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 276 - 321
Target Start/End: Original strand, 2626563 - 2626608
Alignment:
Q  276 aaaaacaaggtaagacatcgtacaatacaccaaatgatgggacccc 321  Q
    ||||||| ||||||||  ||||||||||||||||||||||||||||    
T  2626563 aaaaacagggtaagactgcgtacaatacaccaaatgatgggacccc 2626608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 321
Target Start/End: Original strand, 13160726 - 13160787
Alignment:
Q  260 aaacaacctcttgagtaaaaacaaggtaagacatcgtacaatacaccaaatgatgggacccc 321  Q
    ||||| ||||||| ||||||||| |||||| |  |||||||||||||||||| |||||||||    
T  13160726 aaacagcctcttgtgtaaaaacagggtaaggctgcgtacaatacaccaaatggtgggacccc 13160787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 321
Target Start/End: Original strand, 45071289 - 45071350
Alignment:
Q  260 aaacaacctcttgagtaaaaacaaggtaagacatcgtacaatacaccaaatgatgggacccc 321  Q
    ||||| ||||||| ||||||||| |||||| |  |||||||||||||||||| |||||||||    
T  45071289 aaacagcctcttgtgtaaaaacagggtaaggctgcgtacaatacaccaaatggtgggacccc 45071350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 321
Target Start/End: Original strand, 44530173 - 44530235
Alignment:
Q  260 aaacaacctcttgagtaaaaa-caaggtaagacatcgtacaatacaccaaatgatgggacccc 321  Q
    ||||||||||||| ||||||| || |||||| |  |||||||||||||||||| |||||||||    
T  44530173 aaacaacctcttgtgtaaaaaacagggtaaggctgcgtacaatacaccaaatggtgggacccc 44530235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 321
Target Start/End: Original strand, 12625913 - 12625976
Alignment:
Q  260 aaacaacctcttgagtaaaaa--caaggtaagacatcgtacaatacaccaaatgatgggacccc 321  Q
    ||||||||||||| |||||||  || ||||||||  | |||||||||||||||| |||||||||    
T  12625913 aaacaacctcttgtgtaaaaaaacagggtaagactgcatacaatacaccaaatggtgggacccc 12625976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 321
Target Start/End: Original strand, 5648283 - 5648344
Alignment:
Q  260 aaacaacctcttgagtaaaaacaaggtaagacatcgtacaatacaccaaatgatgggacccc 321  Q
    ||||| ||||||| ||||||||| |||||| |  |||||||||||||||||| |||||||||    
T  5648283 aaacagcctcttgtgtaaaaacagggtaaggctgcgtacaatacaccaaatggtgggacccc 5648344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 317
Target Start/End: Original strand, 40915853 - 40915910
Alignment:
Q  260 aaacaacctcttgagtaaaaacaaggtaagacatcgtacaatacaccaaatgatggga 317  Q
    ||||| ||||||| |||||||||||||||| |  |||||||||||||||||| |||||    
T  40915853 aaacagcctcttgtgtaaaaacaaggtaaggctgcgtacaatacaccaaatggtggga 40915910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 260 - 319
Target Start/End: Complemental strand, 6430736 - 6430677
Alignment:
Q  260 aaacaacctcttgagtaaaaacaaggtaagacatcgtacaatacaccaaatgatgggacc 319  Q
    ||||| ||||||| ||||||||| |||||| |  |||||||||||||||||| |||||||    
T  6430736 aaacagcctcttgtgtaaaaacagggtaaggctgcgtacaatacaccaaatggtgggacc 6430677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 321
Target Start/End: Original strand, 20225008 - 20225068
Alignment:
Q  260 aaacaacctcttgagtaaaaacaaggtaagacatcgtacaatacaccaaatgatgggacccc 321  Q
    ||||||||||||| |||||| || |||||| |  |||||||||||||||||| |||||||||    
T  20225008 aaacaacctcttgtgtaaaa-cagggtaaggctgcgtacaatacaccaaatggtgggacccc 20225068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 321
Target Start/End: Original strand, 49796822 - 49796883
Alignment:
Q  260 aaacaacctcttgagtaaaaacaaggtaagacatcgtacaatacaccaaatgatgggacccc 321  Q
    ||||| ||||||| || |||||| |||||| |  |||||||||||||||||| |||||||||    
T  49796822 aaacagcctcttgtgttaaaacatggtaaggctgcgtacaatacaccaaatggtgggacccc 49796883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 321
Target Start/End: Original strand, 54175085 - 54175150
Alignment:
Q  257 ggaaaacaacctcttgagtaaaaacaaggtaagacatcgtacaatacacc-aaatgatgggacccc 321  Q
    |||||||| ||||||| ||||||||| |||||| |  ||||||||||||| ||||| |||||||||    
T  54175085 ggaaaacagcctcttgtgtaaaaacagggtaaggctgcgtacaatacaccaaaatggtgggacccc 54175150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 321
Target Start/End: Original strand, 11596560 - 11596621
Alignment:
Q  260 aaacaacctcttgagtaaaaacaaggtaagacatcgtacaatacaccaaatgatgggacccc 321  Q
    ||||||||||||| ||||||||| |||||| |  |||| ||||||||||||| |||||||||    
T  11596560 aaacaacctcttgtgtaaaaacagggtaaggctgcgtataatacaccaaatggtgggacccc 11596621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 321
Target Start/End: Complemental strand, 32632667 - 32632606
Alignment:
Q  260 aaacaacctcttgagtaaaaacaaggtaagacatcgtacaatacaccaaatgatgggacccc 321  Q
    ||||| ||||||| ||||||||| |||||| |  |||||||||||||||||| |||||||||    
T  32632667 aaacagcctcttgtgtaaaaacagggtaaggctgcgtacaatacaccaaatggtgggacccc 32632606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 321
Target Start/End: Complemental strand, 46248064 - 46248002
Alignment:
Q  260 aaacaacctcttgagtaaaaa-caaggtaagacatcgtacaatacaccaaatgatgggacccc 321  Q
    ||||| ||||||| ||||||| || ||||||||  |||||||||||||||||| |||||||||    
T  46248064 aaacagcctcttgtgtaaaaaacagggtaagactgcgtacaatacaccaaatggtgggacccc 46248002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 321
Target Start/End: Complemental strand, 31382324 - 31382263
Alignment:
Q  260 aaacaacctcttgagtaaaaacaaggtaagacatcgtacaatacaccaaatgatgggacccc 321  Q
    ||||| ||||||| ||||||||| | |||| |  |||||||||||||||||| |||||||||    
T  31382324 aaacagcctcttgtgtaaaaacaggataaggctgcgtacaatacaccaaatggtgggacccc 31382263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 321
Target Start/End: Complemental strand, 41319900 - 41319855
Alignment:
Q  276 aaaaacaaggtaagacatcgtacaatacaccaaatgatgggacccc 321  Q
    ||||||| |||||| |  ||||||||||||||||||||||||||||    
T  41319900 aaaaacagggtaaggctgcgtacaatacaccaaatgatgggacccc 41319855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 321
Target Start/End: Original strand, 43699 - 43743
Alignment:
Q  277 aaaacaaggtaagacatcgtacaatacaccaaatgatgggacccc 321  Q
    ||||||||||||| |  |||||||||||||||||| |||||||||    
T  43699 aaaacaaggtaaggctgcgtacaatacaccaaatggtgggacccc 43743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University