View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10174_low_22 (Length: 368)
Name: NF10174_low_22
Description: NF10174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10174_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 2e-99; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 16 - 215
Target Start/End: Complemental strand, 51530772 - 51530573
Alignment:
| Q |
16 |
acatcactctttgcaaatgtactttgtaatccttgtaatccttctaaacaagtgtctgtattcacaagaacagcactcagccatgttcttagatcagagc |
115 |
Q |
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| T |
51530772 |
acatcactctttgcaaatgtactttgtaatccttgtaatccttctaaacaagtgtctgtattcacaagaacagcactgagccatgttcttagatcagagc |
51530673 |
T |
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| Q |
116 |
ttagatttccagtactgttattcttccctgtacagaagattttatagcacatttagtttatttacaaattattatatgtgtgaacgtattagtttcagta |
215 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
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| T |
51530672 |
ttagatttccagtactgttattcttccctgtacagaggattttatagcacatttagtttatttacaaattattatatgtgtcaacgtattagttttagta |
51530573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 294 - 357
Target Start/End: Complemental strand, 51530496 - 51530433
Alignment:
| Q |
294 |
taatgtttaatagatattaattgtacctttgggattctgagtagcggaaacagaccaactaagt |
357 |
Q |
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| T |
51530496 |
taatgttttatagatattaattgtacctttgggattctgagtagcggaaacagaccaactaagt |
51530433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 46 - 146
Target Start/End: Complemental strand, 51524558 - 51524458
Alignment:
| Q |
46 |
ccttgtaatccttctaaacaagtgtctgtattcacaagaacagcactcagccatgttcttagatcagagcttagatttccagtactgttattcttccctg |
145 |
Q |
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|||| ||||||||||| ||| ||||||| || |||||||||||||||||||||||| ||||||||| || |||| ||||| || ||||||| |||| ||| |
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| T |
51524558 |
ccttctaatccttctatacatgtgtctggatacacaagaacagcactcagccatgtccttagatcacagtttagttttcctgtgctgttatccttctctg |
51524459 |
T |
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| Q |
146 |
t |
146 |
Q |
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| T |
51524458 |
t |
51524458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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