View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10174_low_23 (Length: 353)

Name: NF10174_low_23
Description: NF10174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10174_low_23
NF10174_low_23
[»] chr4 (5 HSPs)
chr4 (17-345)||(48961235-48961565)
chr4 (41-338)||(48958112-48958409)
chr4 (49-337)||(48912260-48912548)
chr4 (31-345)||(48974076-48974378)
chr4 (17-302)||(48965273-48965555)
[»] scaffold0536 (3 HSPs)
scaffold0536 (49-345)||(6418-6714)
scaffold0536 (49-345)||(10400-10696)
scaffold0536 (17-154)||(1551-1688)
[»] chr8 (1 HSPs)
chr8 (41-338)||(12641395-12641692)
[»] chr2 (3 HSPs)
chr2 (49-325)||(13448339-13448612)
chr2 (58-325)||(13440185-13440449)
chr2 (58-325)||(13454819-13455083)
[»] chr6 (2 HSPs)
chr6 (17-335)||(12590086-12590407)
chr6 (88-325)||(12483391-12483631)
[»] chr7 (1 HSPs)
chr7 (88-325)||(3417457-3417691)
[»] chr5 (2 HSPs)
chr5 (88-325)||(12540700-12540934)
chr5 (184-325)||(28385445-28385583)


Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 17 - 345
Target Start/End: Original strand, 48961235 - 48961565
Alignment:
Q  17 caccaacttcaattccaataccctgcacatcagttatcaacttctcgttgtagaattcttcttcatgtacgggccacgttatcattgggatccctgcact 116  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||    
T  48961235 caccaacttcaattccaataccccgcacatcagttatcaacttctcgttgtagaattgttctccatgtacgggccatgttatcattgggatccctgcact 48961334  T
Q  117 aacagcctcaatggtggag--ttccacccgcaatgcgtcataaacacacccaccgctgtgtggcccaggatcataacttgtggggcccaccccttaatga 214  Q
    | |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48961335 accagcctcaatggtggagagttccacccgcaatgcgtcataaacacacccaccgctgtgtggcccaggatcataacttgtggggcccaccccttaatga 48961434  T
Q  215 tcaaacccttcttcttttcaatgtttctctcttcaaatcctttcgccaaccacttgtctttctcctcttcgctctcatccactttccctttcttttcagg 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  48961435 tcaaacccttcttcttttcaatgtttctctcttcaaatcctttcggcaaccacttgtctttctcctcttcgctctcatccactttcccttttttctcagg 48961534  T
Q  315 aacaacccatacaaattcgtgaccctatgct 345  Q
    ||||||||||||||||||||||||| |||||    
T  48961535 aacaacccatacaaattcgtgacccgatgct 48961565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 41 - 338
Target Start/End: Original strand, 48958112 - 48958409
Alignment:
Q  41 gcacatcagttatcaacttctcgttgtagaattcttcttcatgtacgggccacgttatcattgggatccctgcactaacagcctcaatggtggagttcca 140  Q
    |||||| ||||||||||||||| |||||||||| |||| |||| || |||||||| |||||||| | ||| || ||||||||||| |  |||||||||||    
T  48958112 gcacattagttatcaacttctcattgtagaattgttctccatgcaccggccacgtgatcattggaacccccgcgctaacagcctccacagtggagttcca 48958211  T
Q  141 cccgcaatgcgtcataaacacacccaccgctgtgtggcccaggatcataacttgtggggcccaccccttaatgatcaaacccttcttcttttcaatgttt 240  Q
    ||||||||| ||||||||  ||||||| ||  |||||| ||| |||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||||||    
T  48958212 cccgcaatgtgtcataaatgcacccacggcaatgtggctcagaatcaaaacttgtggggcccaccccctaatgatcaaacctttcttctttccaatgttt 48958311  T
Q  241 ctctcttcaaatcctttcgccaaccacttgtctttctcctcttcgctctcatccactttccctttcttttcaggaacaacccatacaaattcgtgacc 338  Q
    |||||||| |||||||||| |||||||||  ||||||||||||| ||||| ||  ||||||||||||| |||||||||||||||||||||||||||||    
T  48958312 ctctcttcgaatcctttcggcaaccactttcctttctcctcttcactctcgtcttctttccctttcttctcaggaacaacccatacaaattcgtgacc 48958409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 49 - 337
Target Start/End: Complemental strand, 48912548 - 48912260
Alignment:
Q  49 gttatcaacttctcgttgtagaattcttcttcatgtacgggccacgttatcattgggatccctgcactaacagcctcaatggtggagttccacccgcaat 148  Q
    |||||||||||||| ||||| || | |||| |||| |  |||||||| |||||||| | |||||||||||| |||||||  ||||| |||||||| ||||    
T  48912548 gttatcaacttctcattgtaaaactgttctccatgcatcggccacgtgatcattggaacccctgcactaactgcctcaacagtggaattccacccacaat 48912449  T
Q  149 gcgtcataaacacacccaccgctgtgtggcccaggatcataacttgtggggcccaccccttaatgatcaaacccttcttcttttcaatgtttctctcttc 248  Q
    | ||||||||  ||||||| |||||||||| ||| |||||||| ||||| ||||| |||||||| |||| | ||||||||||| | ||  ||||||||||    
T  48912448 gtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatcatagccttcttctttccgataattctctcttc 48912349  T
Q  249 aaatcctttcgccaaccacttgtctttctcctcttcgctctcatccactttccctttcttttcaggaacaacccatacaaattcgtgac 337  Q
    ||| || || | |||||| || ||||||||||||||  | |||| | |  ||| |||||||||||||||||||||||  ||||||||||    
T  48912348 aaacccctttggcaaccatttttctttctcctcttcattgtcattctccgtccgtttcttttcaggaacaacccatatgaattcgtgac 48912260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 31 - 345
Target Start/End: Original strand, 48974076 - 48974378
Alignment:
Q  31 ccaataccctgcacatcagttatcaacttctcgttgtagaattcttcttcatgtacgggccacgttatcattgggatccctgcactaacagcctcaatgg 130  Q
    ||||||||| |||| | |||||||||||||||||||||||||| ||| ||||| || |||||||| |||||||| | |||||||||||| || || | ||    
T  48974076 ccaataccccgcacctgagttatcaacttctcgttgtagaattgttcgtcatgcactggccacgtgatcattggaacccctgcactaacggcttccacgg 48974175  T
Q  131 tggagttccacccgcaatgcgtcataaacacacccaccgctgtgtggcccaggatcataacttgtggggcccaccccttaatgatcaaacccttcttctt 230  Q
    ||||||||||||||||||| ||||  ||  |||| |  || | |||||| |  ||||  |||||||||||||||||| | |||||||            |    
T  48974176 tggagttccacccgcaatgtgtcaagaatgcaccgatagcagggtggcctaaaatcaccacttgtggggcccacccccttatgatca------------t 48974263  T
Q  231 ttcaatgtttctctcttcaaatcctttcgccaaccacttgtctttctcctcttcgctctcatccactttccctttcttttcaggaacaacccatacaaat 330  Q
      |||| || |||||||||||||| || | || |||||| || ||||| || | |||||||||| ||||||||||||| || || ||||||||||  |||    
T  48974264 cccaatattcctctcttcaaatccctttggcatccacttttcgttctcgtcattgctctcatcctctttccctttcttctcggggacaacccatatgaat 48974363  T
Q  331 tcgtgaccctatgct 345  Q
    | ||||||| |||||    
T  48974364 tggtgacccgatgct 48974378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 17 - 302
Target Start/End: Original strand, 48965273 - 48965555
Alignment:
Q  17 caccaacttcaattccaataccctgcacatcagttatcaacttctcgttgtagaattcttcttcatgtacgggccacgttatcattgggatccctgcact 116  Q
    |||||||||| | |||||| ||  |||| || |||||||  || ||||||||||||| |||| |||||   ||||| || ||||| || | ||| ||||     
T  48965273 caccaacttccactccaatccctcgcacttctgttatcagtttttcgttgtagaattgttctccatgtgaaggccatgtaatcatcggaacccccgcacc 48965372  T
Q  117 aacagcctcaatggtggagttccacccgcaatgcgtcataaacacacccaccgctgtgtggcccaggatcataacttgtggggcccaccccttaatgatc 216  Q
    ||||||||| |  ||||||||||| || ||||| ||||||||  ||||||| || | ||||| ||| |||| ||| || || ||||| ||| |||| |||    
T  48965373 aacagcctccactgtggagttccaaccacaatgagtcataaaggcacccacagcggggtggctcagaatcagaacctgcggagcccaacccctaataatc 48965472  T
Q  217 aaacccttcttcttttcaatgtttctctcttcaaatcctttcgccaaccacttgtctttctcctcttcgctctcatccactttccc 302  Q
    |||||   ||||||| |||||||||||||||| ||||| || |  |||||||| |  ||||||||||| ||||||||| |||||||    
T  48965473 aaacc---cttctttccaatgtttctctcttcgaatccctttggtaaccacttttgcttctcctcttcactctcatcctctttccc 48965555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 121; Significance: 6e-62; HSPs: 3)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 49 - 345
Target Start/End: Complemental strand, 6714 - 6418
Alignment:
Q  49 gttatcaacttctcgttgtagaattcttcttcatgtacgggccacgttatcattgggatccctgcactaacagcctcaatggtggagttccacccgcaat 148  Q
    ||||||||||| || ||||| |||| |||| |||| || |||||||| ||||| || | ||||||||||||||||||||  ||||| |||||||| ||||    
T  6714 gttatcaacttttcattgtaaaattgttctccatgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattccacccacaat 6615  T
Q  149 gcgtcataaacacacccaccgctgtgtggcccaggatcataacttgtggggcccaccccttaatgatcaaacccttcttcttttcaatgtttctctcttc 248  Q
    ||||||||||| ||||||  ||| |||||| ||  |||||||||||||| ||||| ||| |||| |||||||||||||||||| | || |||||||||||    
T  6614 gcgtcataaacgcacccagagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccgatatttctctcttc 6515  T
Q  249 aaatcctttcgccaaccacttgtctttctcctcttcgctctcatccactttccctttcttttcaggaacaacccatacaaattcgtgaccctatgct 345  Q
     ||||| || | |||||| ||  ||||||||||||| ||||||||  ||||||||||||| ||||||||||||||||  |||| ||||||| |||||    
T  6514 gaatccctttggcaaccattttcctttctcctcttcactctcatcttctttccctttcttctcaggaacaacccatatgaatttgtgacccgatgct 6418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 49 - 345
Target Start/End: Complemental strand, 10696 - 10400
Alignment:
Q  49 gttatcaacttctcgttgtagaattcttcttcatgtacgggccacgttatcattgggatccctgcactaacagcctcaatggtggagttccacccgcaat 148  Q
    |||||||||||||| ||||| |||| |||| |||| |  |||||||| |||||||| | |||||||||||| ||||| | |||||| |||||||| ||||    
T  10696 gttatcaacttctcattgtaaaattgttctccatgcattggccacgtgatcattggaacccctgcactaaccgcctccacggtggaattccacccacaat 10597  T
Q  149 gcgtcataaacacacccaccgctgtgtggcccaggatcataacttgtggggcccaccccttaatgatcaaacccttcttcttttcaatgtttctctcttc 248  Q
    | ||||||||| |||||||  | |||||||  || |||||||| || |||||||| |||||||| |||||||||||||||||| ||||   ||| |||||    
T  10596 gtgtcataaacgcacccacaacagtgtggcttagaatcataacctgaggggcccaacccttaataatcaaacccttcttctttgcaataactctttcttc 10497  T
Q  249 aaatcctttcgccaaccacttgtctttctcctcttcgctctcatccactttccctttcttttcaggaacaacccatacaaattcgtgaccctatgct 345  Q
    |||||||||||  | ||| || |||||||||||||  ||||||| | ||||||||||||| ||||||||||| ||||||||||||| |||| |||||    
T  10496 aaatcctttcggtagccatttttctttctcctcttgactctcattctctttccctttcttctcaggaacaactcatacaaattcgtaacccgatgct 10400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 154
Target Start/End: Complemental strand, 1688 - 1551
Alignment:
Q  17 caccaacttcaattccaataccctgcacatcagttatcaacttctcgttgtagaattcttcttcatgtacgggccacgttatcattgggatccctgcact 116  Q
    |||| ||||| | |||||| || ||||| | |||||||||| | ||||| |||||||  ||   |||||| ||||| || |||||||| || ||||||||    
T  1688 caccgacttccactccaatcccatgcacctgagttatcaacgtttcgttatagaattgatcactatgtactggccatgtgatcattggaattcctgcact 1589  T
Q  117 aacagcctcaatggtggagttccacccgcaatgcgtca 154  Q
    |||||||||  |  | ||||||||||| ||||| ||||    
T  1588 aacagcctcggttatagagttccacccacaatgtgtca 1551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 41 - 338
Target Start/End: Complemental strand, 12641692 - 12641395
Alignment:
Q  41 gcacatcagttatcaacttctcgttgtagaattcttcttcatgtacgggccacgttatcattgggatccctgcactaacagcctcaatggtggagttcca 140  Q
    ||||| ||||||||| |||||| || ||||| | |||| | || || |||||||| |||||||| |||||||||||||||||||| |    ||||||| |    
T  12641692 gcacaacagttatcagcttctcattatagaactgttctccttgcactggccacgtgatcattggaatccctgcactaacagcctctaccaaggagttcga 12641593  T
Q  141 cccgcaatgcgtcataaacacacccaccgctgtgtggcccaggatcataacttgtggggcccaccccttaatgatcaaacccttcttcttttcaatgttt 240  Q
    ||||||||||||||| ||  ||||||| || | |||||  |  ||||| ||||||||||||||| || ||||||| ||||| ||||| |||||||  |||    
T  12641592 cccgcaatgcgtcatgaatgcacccacagcagcgtggcttaaaatcattacttgtggggcccactccctaatgataaaacctttcttattttcaacattt 12641493  T
Q  241 ctctcttcaaatcctttcgccaaccacttgtctttctcctcttcgctctcatccactttccctttcttttcaggaacaacccatacaaattcgtgacc 338  Q
    |||||||| |||||||| | ||||||||| |||||||||||||| ||||||||   |||||||||||| |||||||||||||||||||||||||||||    
T  12641492 ctctcttcgaatcctttaggcaaccacttttctttctcctcttcactctcatcttttttccctttcttctcaggaacaacccatacaaattcgtgacc 12641395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 3e-51; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 49 - 325
Target Start/End: Original strand, 13448339 - 13448612
Alignment:
Q  49 gttatcaacttctcgttgtagaattcttcttcatgtacgggccacgttatcattgggatccctgcactaacagcctcaatggtggagttccacccgcaat 148  Q
    |||||||  ||||| ||||||||||  ||| |||| || ||||||||||||||||| |  || |||||||||||||| | ||| ||||||| ||||||||    
T  13448339 gttatcagtttctcattgtagaattgatctccatgaaccggccacgttatcattggaactcccgcactaacagcctctacggttgagttccccccgcaat 13448438  T
Q  149 gcgtcataaacacacccaccgctgtgtggcccaggatcataacttgtggggcccaccccttaatgatcaaacccttcttcttttcaatgtttctctcttc 248  Q
    ||||||||||  | ||||| || | ||||| ||  ||| |||| ||||||||||| ||| ||||||||||||||||||||    | || |||||||||||    
T  13448439 gcgtcataaatccccccactgcagggtggctcaatatcttaacctgtggggcccaacccctaatgatcaaacccttcttcc---cgatatttctctcttc 13448535  T
Q  249 aaatcctttcgccaaccacttgtctttctcctcttcgctctcatccactttccctttcttttcaggaacaacccata 325  Q
    |||||| ||||  |||||||| |||||||| ||||||||||||||  ||||||||||||| ||||||||||||||||    
T  13448536 aaatcccttcggtaaccacttttctttctcttcttcgctctcatcttctttccctttcttctcaggaacaacccata 13448612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 58 - 325
Target Start/End: Original strand, 13440185 - 13440449
Alignment:
Q  58 ttctcgttgtagaattcttcttcatgtacgggccacgttatcattgggatccctgcactaacagcctcaatggtggagttccacccgcaatgcgtcataa 157  Q
    ||||||||||||||||  ||| |||| || ||||||||||||||||| |  || |||||||||| ||| |   | ||||||| |||||||||||||||||    
T  13440185 ttctcgttgtagaattgatctccatgaaccggccacgttatcattggaactcccgcactaacagactctacaattgagttccccccgcaatgcgtcataa 13440284  T
Q  158 acacacccaccgctgtgtggcccaggatcataacttgtggggcccaccccttaatgatcaaacccttcttcttttcaatgtttctctcttcaaatccttt 257  Q
    |  | |||||||| | ||||| ||  ||| |||||||||||||||| |||||||||||||||||| || || |   ||||||||||||||| ||||| ||    
T  13440285 atccccccaccgcagggtggctcaatatcttaacttgtggggcccaacccttaatgatcaaacccatcctcct---aatgtttctctcttcgaatccctt 13440381  T
Q  258 cgccaaccacttgtctttctcctcttcgctctcatccactttccctttcttttcaggaacaacccata 325  Q
     | ||||||||| |||||||| || || ||||||||  ||||||||||||| ||||||||||||||||    
T  13440382 tggcaaccacttttctttctcttcctcactctcatcttctttccctttcttctcaggaacaacccata 13440449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 58 - 325
Target Start/End: Original strand, 13454819 - 13455083
Alignment:
Q  58 ttctcgttgtagaattcttcttcatgtacgggccacgttatcattgggatccctgcactaacagcctcaatggtggagttccacccgcaatgcgtcataa 157  Q
    ||||||||||||||||  ||| |||| || ||||||||||||||||| |  ||    ||||||||||| | | | ||||||| |||||||||||||||||    
T  13454819 ttctcgttgtagaattgatctccatggactggccacgttatcattggaactcccatgctaacagcctctacgattgagttccccccgcaatgcgtcataa 13454918  T
Q  158 acacacccaccgctgtgtggcccaggatcataacttgtggggcccaccccttaatgatcaaacccttcttcttttcaatgtttctctcttcaaatccttt 257  Q
    |  | ||||| || | ||| | ||  ||| |||||||||||||||| ||| |||||||||||||||| ||||   | |||||| ||||||||||||| ||    
T  13454919 atccccccactgcagggtgactcaatatcttaacttgtggggcccaacccctaatgatcaaaccctttttct---cgatgtttttctcttcaaatccctt 13455015  T
Q  258 cgccaaccacttgtctttctcctcttcgctctcatccactttccctttcttttcaggaacaacccata 325  Q
    || ||||||||| | |||||||||||||||||||||  ||||||||||||| || |||||||||||||    
T  13455016 cggcaaccacttttgtttctcctcttcgctctcatcttctttccctttcttctccggaacaacccata 13455083  T

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Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 335
Target Start/End: Complemental strand, 12590407 - 12590086
Alignment:
Q  17 caccaacttcaattccaataccctgcacatcagttatcaacttctcgttgtagaattcttcttcatgtacgggccacgttatcattgggatccctgcact 116  Q
    |||||||||| | |||||| || ||||||||||||||||||||||| ||||| || | |||  |||  |  ||||| || ||||| || || || |||||    
T  12590407 caccaacttccactccaattccatgcacatcagttatcaacttctcattgtaaaaatgttcaccattcaatggccatgtgatcatcggaattccagcact 12590308  T
Q  117 aacagcctcaatggtggagttccacccgcaatgcgtcataaacacacccaccgctgtgtggcccaggatcataacttgtggggcccaccccttaatgatc 216  Q
    ||| ||||| | |  ||| ||||| || ||||| ||||||||| | ||||| ||  |||||| ||  ||||| |||||||||||||| ||| ||||||||    
T  12590307 aaccgcctccacgacggaattccatccacaatgtgtcataaacgcgcccactgcattgtggctcataatcattacttgtggggcccaacccctaatgatc 12590208  T
Q  217 aaacccttcttcttt---tcaatgtttctctcttcaaatcctttcgccaaccacttgtctttctcctcttcgctctcatccactttccctttcttttcag 313  Q
    |||||||||||||||    ||||||||||||||||||||||  | | |||||| || | ||| ||||| || ||||||||  | |||||||| || || |    
T  12590207 aaacccttcttctttctcccaatgtttctctcttcaaatccactaggcaaccatttttgtttatcctcatcactctcatcttccttcccttttttctcgg 12590108  T
Q  314 gaacaacccatacaaattcgtg 335  Q
    ||| ||||||||| ||||||||    
T  12590107 gaataacccatacgaattcgtg 12590086  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 88 - 325
Target Start/End: Complemental strand, 12483631 - 12483391
Alignment:
Q  88 ggccacgttatcattgggatccctgcactaacagcctcaatggtggagttccacccgcaatgcgtcataaacacacccaccgctgtgtggcccaggatca 187  Q
    |||||||| |||||||| |||||||||||||| || || |     || ||||| || || || ||||||||  ||||||| || | ||||| ||  ||||    
T  12483631 ggccacgtgatcattggaatccctgcactaaccgcttccacaacagaattccatccacagtgagtcataaatgcacccactgcagggtggctcaaaatca 12483532  T
Q  188 taacttgtggggcccaccccttaatgatcaaacccttcttctt--ttc-aatgtttctctcttcaaatcctttcgccaaccacttgtctttctcctcttc 284  Q
      || ||||| ||||||||| | ||||| |||||| |||| ||  ||| |||||||||||| |||||||| |||| ||||||||| ||||||||||| ||    
T  12483531 gtacctgtggtgcccaccccctgatgattaaacccatcttattccttctaatgtttctctcctcaaatcccttcggcaaccacttttctttctcctcatc 12483432  T
Q  285 gctctcatccactttccctttcttttcaggaacaacccata 325  Q
    |||||||||  | |||||||| || ||||||||||||||||    
T  12483431 gctctcatcttccttcccttttttctcaggaacaacccata 12483391  T

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Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 88 - 325
Target Start/End: Complemental strand, 3417691 - 3417457
Alignment:
Q  88 ggccacgttatcattgggatccctgcactaacagcctcaatggtggagttccacccgcaatgcgtcataaacacacccaccgctgtgtggcccaggatca 187  Q
    ||||||||||||||||| |  ||||||| |||||||||||     ||||||| ||| ||||| ||||||||  | || ||||| | ||||| ||  |||     
T  3417691 ggccacgttatcattggaactcctgcaccaacagcctcaacaaatgagttccccccacaatgtgtcataaatccccctaccgcagggtggctcaatatct 3417592  T
Q  188 taacttgtggggcccaccccttaatgatcaaacccttcttcttttcaatgtttctctcttcaaatcctttcgccaaccacttgtctttctcctcttcgct 287  Q
     ||| ||||||||||| ||| ||| |||||||||||||||   | ||||||||||||| |||||||| |||| ||||||||| |||||||| |||||| |    
T  3417591 gaacctgtggggcccaacccctaacgatcaaacccttctt---tccaatgtttctctcctcaaatcccttcggcaaccacttttctttctcttcttcgtt 3417495  T
Q  288 ctcatccactttccctttcttttcaggaacaacccata 325  Q
    ||||||  |||| |||||||| ||| ||||||||||||    
T  3417494 ctcatcttcttttcctttcttctcaagaacaacccata 3417457  T

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Target: chr5 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 88 - 325
Target Start/End: Original strand, 12540700 - 12540934
Alignment:
Q  88 ggccacgttatcattgggatccctgcactaacagcctcaatggtggagttccacccgcaatgcgtcataaacacacccaccgctgtgtggcccaggatca 187  Q
    ||||||||||||||||| |  || |||| ||||||||| |   | ||||| | ||| ||||| ||||||||  | |||||||| | ||||| ||  |||     
T  12540700 ggccacgttatcattggaactcccgcaccaacagcctctacaattgagtttcccccacaatgtgtcataaatccccccaccgcagggtggctcaatatct 12540799  T
Q  188 taacttgtggggcccaccccttaatgatcaaacccttcttcttttcaatgtttctctcttcaaatcctttcgccaaccacttgtctttctcctcttcgct 287  Q
    |||| ||||||||||| ||| |||||||||||||||| ||   | ||||||||||||| |||||||| |||| || |||||| |||||||| |||||  |    
T  12540800 taacctgtggggcccaacccctaatgatcaaacccttttt---tccaatgtttctctcctcaaatcccttcggcatccacttttctttctcttcttcagt 12540896  T
Q  288 ctcatccactttccctttcttttcaggaacaacccata 325  Q
    ||||||  |||||||| |||| ||||||||||||||||    
T  12540897 ctcatcttctttccctctcttctcaggaacaacccata 12540934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 184 - 325
Target Start/End: Original strand, 28385445 - 28385583
Alignment:
Q  184 atcataacttgtggggcccaccccttaatgatcaaacccttcttcttttcaatgtttctctcttcaaatcctttcgccaaccacttgtctttctcctctt 283  Q
    |||| ||||||||||||||| ||| | || || |||||||||||   | ||||||||||||| |||||||| || | || |||||| |||||||| ||||    
T  28385445 atcagaacttgtggggcccaacccctgattatgaaacccttctt---tccaatgtttctctcctcaaatccctttggcagccacttttctttctcttctt 28385541  T
Q  284 cgctctcatccactttccctttcttttcaggaacaacccata 325  Q
    || |||||||  ||||||||||||| ||||||||||||||||    
T  28385542 cgatctcatcttctttccctttcttctcaggaacaacccata 28385583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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