View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10174_low_25 (Length: 346)

Name: NF10174_low_25
Description: NF10174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10174_low_25
NF10174_low_25
[»] scaffold0015 (2 HSPs)
scaffold0015 (11-346)||(40361-40696)
scaffold0015 (11-115)||(32309-32413)
[»] chr1 (15 HSPs)
chr1 (20-339)||(24233408-24233718)
chr1 (20-94)||(24242846-24242920)
chr1 (33-93)||(23896139-23896199)
chr1 (33-89)||(24629213-24629269)
chr1 (30-89)||(24246496-24246555)
chr1 (13-94)||(24634787-24634868)
chr1 (30-83)||(25478864-25478917)
chr1 (13-93)||(24513045-24513125)
chr1 (13-83)||(25610948-25611018)
chr1 (29-91)||(24626770-24626832)
chr1 (13-83)||(45692869-45692942)
chr1 (33-83)||(51782798-51782848)
chr1 (35-88)||(24805076-24805129)
chr1 (32-84)||(51381456-51381508)
chr1 (32-84)||(51858604-51858656)
[»] chr7 (1 HSPs)
chr7 (13-346)||(1421151-1421490)
[»] chr5 (12 HSPs)
chr5 (30-95)||(3181704-3181769)
chr5 (32-83)||(11081812-11081863)
chr5 (32-83)||(23766863-23766914)
chr5 (32-83)||(23816711-23816762)
chr5 (33-82)||(20292995-20293044)
chr5 (32-83)||(23769647-23769698)
chr5 (32-83)||(23819495-23819546)
chr5 (33-82)||(20301443-20301492)
chr5 (33-82)||(20305856-20305905)
chr5 (33-82)||(20310260-20310309)
chr5 (35-83)||(1427697-1427745)
chr5 (35-83)||(23732166-23732214)
[»] chr4 (2 HSPs)
chr4 (13-93)||(11032899-11032979)
chr4 (32-76)||(55419788-55419832)
[»] chr3 (29 HSPs)
chr3 (32-83)||(2696733-2696784)
chr3 (32-83)||(4142135-4142186)
chr3 (32-83)||(4157945-4157996)
chr3 (32-82)||(1437996-1438045)
chr3 (32-82)||(2456249-2456299)
chr3 (32-83)||(1891065-1891116)
chr3 (32-83)||(3754599-3754650)
chr3 (32-82)||(771500-771550)
chr3 (33-82)||(13498224-13498273)
chr3 (32-82)||(2442039-2442089)
chr3 (32-82)||(7942485-7942535)
chr3 (33-83)||(9608346-9608396)
chr3 (32-81)||(2631358-2631407)
chr3 (19-80)||(23197014-23197075)
chr3 (40-80)||(2459277-2459317)
chr3 (32-80)||(23230983-23231031)
chr3 (40-83)||(803227-803270)
chr3 (32-83)||(1931155-1931206)
chr3 (32-83)||(1940580-1940631)
chr3 (32-83)||(7432055-7432106)
chr3 (32-82)||(956381-956431)
chr3 (33-83)||(968670-968720)
chr3 (32-82)||(7324432-7324482)
chr3 (26-80)||(7398174-7398228)
chr3 (32-82)||(37753346-37753396)
chr3 (40-82)||(43991960-43992002)
chr3 (35-80)||(997578-997623)
chr3 (35-80)||(1013968-1014013)
chr3 (32-72)||(2686313-2686353)
[»] chr2 (6 HSPs)
chr2 (32-82)||(36577366-36577416)
chr2 (32-90)||(7160755-7160813)
chr2 (32-79)||(7168691-7168738)
chr2 (32-82)||(7156193-7156243)
chr2 (40-82)||(7174382-7174424)
chr2 (32-73)||(6538843-6538884)
[»] chr6 (8 HSPs)
chr6 (33-78)||(9819831-9819876)
chr6 (33-78)||(9825517-9825562)
chr6 (32-81)||(24417487-24417536)
chr6 (33-78)||(9703888-9703933)
chr6 (32-72)||(1453841-1453881)
chr6 (32-72)||(1465533-1465573)
chr6 (32-80)||(19119065-19119113)
chr6 (32-80)||(19126359-19126407)
[»] scaffold0044 (1 HSPs)
scaffold0044 (32-83)||(89142-89193)


Alignment Details
Target: scaffold0015 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 11 - 346
Target Start/End: Original strand, 40361 - 40696
Alignment:
Q  11 agcaaaggaaggaagacaaatcaatttaatccaagagtctttatttccatattccttcataagccaaacatcagtaaaagagtcgtttcttttttgagaa 110  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40361 agcaaaggaaggaagacgaatcaatttaatccaagagtctttattttcatattccttcataagccaaacatcagtaaaagagtcgtttcttttttgagaa 40460  T
Q  111 aatatgcacaagctatccctcaagatatccaaagttgagatattaatatttccagaatctggatgcagtatttcctcttaagattcctttcgcaaatgta 210  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  40461 aatatgcacaagcaatccctcaagatatccaaagttgagatattaatatttccagaatctggatgcagtatttcctcgtaagattcctttcgcaaatgta 40560  T
Q  211 gagaaacaatgacacataagtcacgagttgaattacaatatataaaccaattaactgtgcgactcacaaatactccatgttgatcacaacgaaacttaga 310  Q
    ||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  40561 gagaaacaatgacacataagtcacgagttgaattacaatatgtctaccaattaactgtgccactcacaaatactccatgtcgatcacaacgaaacttaga 40660  T
Q  311 agggaaatctttaatccttctccaagagttggtgcc 346  Q
    |||||| |||| ||||||||||||||||||||||||    
T  40661 agggaagtcttcaatccttctccaagagttggtgcc 40696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 11 - 115
Target Start/End: Original strand, 32309 - 32413
Alignment:
Q  11 agcaaaggaaggaagacaaatcaatttaatccaagagtctttatttccatattccttcataagccaaacatcagtaaaagagtcgtttcttttttgagaa 110  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  32309 agcaaaggaaggaagacgaatcaatttaatccaagagtctttatttccatattccttcataagccaaacatcaataaaagagtcgtttcttttttgagaa 32408  T
Q  111 aatat 115  Q
    |||||    
T  32409 aatat 32413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 3e-51; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 20 - 339
Target Start/End: Original strand, 24233408 - 24233718
Alignment:
Q  20 aggaagacaaatcaatttaatccaagagtctttatttccatattccttcataagccaaacatcagtaaaagagtcgtttcttttttgagaaaatatgcac 119  Q
    |||||||| |||||||||||||||||| ||||||||||| |||||      ||||||||||||||||||||| ||| |||||||| ||||||||||||||    
T  24233408 aggaagactaatcaatttaatccaagattctttatttccgtattc------aagccaaacatcagtaaaagaatcggttctttttcgagaaaatatgcac 24233501  T
Q  120 aagctatccctcaagatatccaaagttgagatattaatatttccagaatctggatgcagtatttcctcttaagattcctttcgcaaatgtagagaaacaa 219  Q
    ||||  |||||||  ||||||||||| || | |  || || ||||||||| |||    ||||||| |  ||||||||||| | |||||| ||||||||||    
T  24233502 aagcactccctcatcatatccaaagtcgacaaaaaaaaatctccagaatcaggaactggtatttcttgataagattccttccccaaatgaagagaaacaa 24233601  T
Q  220 tgacacataagtcacgagttgaattacaatatataaaccaattaactgtgcgactcacaaatactccatgttgatcacaacgaaacttagaagggaaatc 319  Q
    ||||||  |||||||   |||| ||| ||||  | |||||||| ||||||| || ||||| |||||||||| || || |||||||| |||||||||| ||    
T  24233602 tgacacccaagtcac---ttgagttataataagtcaaccaattcactgtgccacacacaactactccatgtcgaccaaaacgaaacatagaagggaagtc 24233698  T
Q  320 tttaatccttctccaagagt 339  Q
     |||||||||||||||||||    
T  24233699 cttaatccttctccaagagt 24233718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 24242846 - 24242920
Alignment:
Q  20 aggaagacaaatcaatttaatccaagagtctttatttccatattccttcataagccaaacatcagtaaaagagtc 94  Q
    |||||||| ||| |||||||||||||| ||||||||||| |||  ||||||||||||||||||||||||||||||    
T  24242846 aggaagacgaattaatttaatccaagactctttatttccgtatatcttcataagccaaacatcagtaaaagagtc 24242920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 33 - 93
Target Start/End: Original strand, 23896139 - 23896199
Alignment:
Q  33 aatttaatccaagagtctttatttccatattccttcataagccaaacatcagtaaaagagt 93  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  23896139 aatttaacccaagactctttatttccatattccttcataagccaaacatcaataaaagagt 23896199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 89
Target Start/End: Original strand, 24629213 - 24629269
Alignment:
Q  33 aatttaatccaagagtctttatttccatattccttcataagccaaacatcagtaaaa 89  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||    
T  24629213 aatttaatccaagactctttatttccgtattccttcataagccaaacatctgtaaaa 24629269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 30 - 89
Target Start/End: Original strand, 24246496 - 24246555
Alignment:
Q  30 atcaatttaatccaagagtctttatttccatattccttcataagccaaacatcagtaaaa 89  Q
    |||||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||||||    
T  24246496 atcaatttcatccaagactctttatttccgtattctttcataagccaaacatcagtaaaa 24246555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 24634787 - 24634868
Alignment:
Q  13 caaaggaaggaagacaaatcaatttaatccaagagtctttatttccatattccttcataagccaaacatcagtaaaagagtc 94  Q
    ||||| ||||||| || ||||||| |||| |||| |||||| |||| |||||||||||||||||||||||| || |||||||    
T  24634787 caaagtaaggaaggcagatcaattcaatctaagactctttaattccgtattccttcataagccaaacatcattagaagagtc 24634868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 25478917 - 25478864
Alignment:
Q  30 atcaatttaatccaagagtctttatttccatattccttcataagccaaacatca 83  Q
    ||||||||||||||||| |||||||| || ||||||||||||||||||||||||    
T  25478917 atcaatttaatccaagattctttattaccgtattccttcataagccaaacatca 25478864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 24513125 - 24513045
Alignment:
Q  13 caaaggaaggaagacaaatcaatttaatccaagagtctttatttccatattccttcataagccaaacatcagtaaaagagt 93  Q
    ||||| ||||||||   |||||||||||||| || |||||| |||||||||| |||||||||||||||||| | |||||||    
T  24513125 caaagtaaggaagatggatcaatttaatccatgactctttacttccatattctttcataagccaaacatcattgaaagagt 24513045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 25610948 - 25611018
Alignment:
Q  13 caaaggaaggaagacaaatcaatttaatccaagagtctttatttccatattccttcataagccaaacatca 83  Q
    ||||| ||||||||  ||||||||||| |||||| ||||||||||| |||||| |||| ||||||||||||    
T  25610948 caaagtaaggaagatgaatcaatttaacccaagattctttatttccgtattccgtcattagccaaacatca 25611018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 91
Target Start/End: Original strand, 24626770 - 24626832
Alignment:
Q  29 aatcaatttaatccaagagtctttatttccatattccttcataagccaaacatcagtaaaaga 91  Q
    ||||||||||| |||||| |||||| |||  |||||||||||||||||||||||  |||||||    
T  24626770 aatcaatttaacccaagactctttaattctgtattccttcataagccaaacatcgataaaaga 24626832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 45692869 - 45692942
Alignment:
Q  13 caaaggaaggaagacaaatcaatttaatccaagagtctt---tatttccatattccttcataagccaaacatca 83  Q
    ||||| ||| |||||||||||||||||| ||||| || |   ||| ||| ||||||||||||||||||||||||    
T  45692869 caaagtaagaaagacaaatcaatttaatacaagactcctccttatatccgtattccttcataagccaaacatca 45692942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 51782848 - 51782798
Alignment:
Q  33 aatttaatccaagagtctttatttccatattccttcataagccaaacatca 83  Q
    |||||| ||||||| | || |||||||||||||||||||| ||||||||||    
T  51782848 aatttattccaagattgttcatttccatattccttcataatccaaacatca 51782798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 24805076 - 24805129
Alignment:
Q  35 tttaatccaagagtctttatttccatattccttcataagccaaacatcagtaaa 88  Q
    ||||||||||||||||| ||||||  ||||||| | ||||||||||||| ||||    
T  24805076 tttaatccaagagtcttcatttccgcattccttgaaaagccaaacatcattaaa 24805129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 51381456 - 51381508
Alignment:
Q  32 caatttaatccaagagtctttatttccatattccttcataagccaaacatcag 84  Q
    ||||||| ||||||| |||| |||||||||||| ||||||| ||||| |||||    
T  51381456 caatttagtccaagactcttcatttccatattctttcataatccaaatatcag 51381508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 51858656 - 51858604
Alignment:
Q  32 caatttaatccaagagtctttatttccatattccttcataagccaaacatcag 84  Q
    ||||||| ||||||| |||  |||||||||||||||||| | |||||||||||    
T  51858656 caatttagtccaagattctacatttccatattccttcatgatccaaacatcag 51858604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 13 - 346
Target Start/End: Original strand, 1421151 - 1421490
Alignment:
Q  13 caaaggaaggaagacaaatcaatttaatccaagagtctttatttccatattccttcataagccaaacatcagtaaaagagtcgtttcttttttgagaaaa 112  Q
    ||||| ||||||||  |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||| ||  |||| | |||||||    
T  1421151 caaagtaaggaagatgaatcaatttaatccaagactctttatttccgtattccttcataagccaaacatcagtagaagagtggtgactttctcgagaaaa 1421250  T
Q  113 tatgcacaagctatccctcaagatatccaaagttgagatattaatatttccagaatctggatgcagtatttcctcttaagattcctttcgcaaatgtaga 212  Q
     |||||||||| ||||||||  | | |||| ||| |  |||| | ||||||| |||  || ||| |||| || |  ||||||||||| | |||||| |||    
T  1421251 aatgcacaagcaatccctcatcacacccaaggttaacttattcagatttccataatgaggttgcggtatctcttgataagattccttccccaaatgaaga 1421350  T
Q  213 gaaacaatgacacataagtc------acgagttgaattacaatatataaaccaattaactgtgcgactcacaaatactccatgttgatcacaacgaaact 306  Q
    |||||||||  ||  ||  |      ||   || ||| ||||||| | ||||||||||| |||| ||| || |||| ||||||| | ||  ||||||  |    
T  1421351 gaaacaatggaacgcaacccattaaaaccgtttaaataacaatatgtcaaccaattaaccgtgccacttacgaatattccatgtcgttccaaacgaacat 1421450  T
Q  307 tagaagggaaatctttaatccttctccaagagttggtgcc 346  Q
    |||||||||| || ||||||||||||||||||||||||||    
T  1421451 tagaagggaagtccttaatccttctccaagagttggtgcc 1421490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 95
Target Start/End: Complemental strand, 3181769 - 3181704
Alignment:
Q  30 atcaatttaatccaagagtctttatttccatattccttcataagccaaacatcagtaaaagagtcg 95  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||||||||  ||||||||||    
T  3181769 atcaatttaatccaagactcttcatttccatattccttcataagccaaacatcatcaaaagagtcg 3181704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 11081863 - 11081812
Alignment:
Q  32 caatttaatccaagagtctttatttccatattccttcataagccaaacatca 83  Q
    ||||||| ||||||| |||||||||||||| |||||||||| ||||||||||    
T  11081863 caatttagtccaagactctttatttccatactccttcataacccaaacatca 11081812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 23766863 - 23766914
Alignment:
Q  32 caatttaatccaagagtctttatttccatattccttcataagccaaacatca 83  Q
    ||||||| ||||||| ||||||||||||||||| ||||||| ||||||||||    
T  23766863 caatttagtccaagactctttatttccatattctttcataatccaaacatca 23766914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 23816711 - 23816762
Alignment:
Q  32 caatttaatccaagagtctttatttccatattccttcataagccaaacatca 83  Q
    ||||||| ||||||| ||||||||||||||||| ||||||| ||||||||||    
T  23816711 caatttagtccaagactctttatttccatattctttcataatccaaacatca 23816762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 20293044 - 20292995
Alignment:
Q  33 aatttaatccaagagtctttatttccatattccttcataagccaaacatc 82  Q
    |||||| ||||||| |||||| |||||||||||||||||| |||||||||    
T  20293044 aatttagtccaagactctttaattccatattccttcataatccaaacatc 20292995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 23769647 - 23769698
Alignment:
Q  32 caatttaatccaagagtctttatttccatattccttcataagccaaacatca 83  Q
    ||||||| |||||||  ||||||| |||||||||||||||| ||||||||||    
T  23769647 caatttagtccaagacgctttattcccatattccttcataatccaaacatca 23769698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 23819495 - 23819546
Alignment:
Q  32 caatttaatccaagagtctttatttccatattccttcataagccaaacatca 83  Q
    ||||||| |||||||  ||||||| |||||||||||||||| ||||||||||    
T  23819495 caatttagtccaagacgctttattcccatattccttcataatccaaacatca 23819546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 20301492 - 20301443
Alignment:
Q  33 aatttaatccaagagtctttatttccatattccttcataagccaaacatc 82  Q
    |||||| ||||||| |||||| || ||||||||||||||| |||||||||    
T  20301492 aatttagtccaagactctttaattgcatattccttcataatccaaacatc 20301443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 20305905 - 20305856
Alignment:
Q  33 aatttaatccaagagtctttatttccatattccttcataagccaaacatc 82  Q
    |||||| ||||||| |||||| |||||||||||||||||| ||| |||||    
T  20305905 aatttagtccaagactctttaattccatattccttcataatccagacatc 20305856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 20310309 - 20310260
Alignment:
Q  33 aatttaatccaagagtctttatttccatattccttcataagccaaacatc 82  Q
    |||||| ||||||| |||||| |||||||||||||||||| ||| |||||    
T  20310309 aatttagtccaagactctttaattccatattccttcataatccagacatc 20310260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 1427697 - 1427745
Alignment:
Q  35 tttaatccaagagtctttatttccatattccttcataagccaaacatca 83  Q
    |||||||||||| ||| |||||||||| || ||||||| ||||||||||    
T  1427697 tttaatccaagactctgtatttccatactctttcataacccaaacatca 1427745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 23732214 - 23732166
Alignment:
Q  35 tttaatccaagagtctttatttccatattccttcataagccaaacatca 83  Q
    |||| |||||||  ||||||| |||||||||||||||| ||||||||||    
T  23732214 tttattccaagacgctttattcccatattccttcataatccaaacatca 23732166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 11032979 - 11032899
Alignment:
Q  13 caaaggaaggaagacaaatcaatttaatccaagagtctttatttccatattccttcataagccaaacatcagtaaaagagt 93  Q
    ||||| ||||||||   ||||||||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||||||||    
T  11032979 caaagtaaggaagatggatcaatttaatccaagactctttatttccgtattccttcatgagccaaacatcggtaaaagagt 11032899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 55419832 - 55419788
Alignment:
Q  32 caatttaatccaagagtctttatttccatattccttcataagcca 76  Q
    ||||||| ||||||| ||||||||||||||  |||||||||||||    
T  55419832 caatttagtccaagaatctttatttccataaaccttcataagcca 55419788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 2696733 - 2696784
Alignment:
Q  32 caatttaatccaagagtctttatttccatattccttcataagccaaacatca 83  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  2696733 caatttaatccaagactctttatttccatattccttcataatccaaacatca 2696784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 4142135 - 4142186
Alignment:
Q  32 caatttaatccaagagtctttatttccatattccttcataagccaaacatca 83  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  4142135 caatttagtccaagactctttatttccatattccttcataagccaaacatca 4142186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 4157945 - 4157996
Alignment:
Q  32 caatttaatccaagagtctttatttccatattccttcataagccaaacatca 83  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  4157945 caatttagtccaagactctttatttccatattccttcataagccaaacatca 4157996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 1438045 - 1437996
Alignment:
Q  32 caatttaatccaagagtctttatttccatattccttcataagccaaacatc 82  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1438045 caatttaatccaagagtctttatttccatattccttcataa-ccaaacatc 1437996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 2456299 - 2456249
Alignment:
Q  32 caatttaatccaagagtctttatttccatattccttcataagccaaacatc 82  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  2456299 caatttagtccaagagtctttatttccatattccttcataacccaaacatc 2456249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 1891065 - 1891116
Alignment:
Q  32 caatttaatccaagagtctttatttccatattccttcataagccaaacatca 83  Q
    ||||||| ||||||||||||||||||||| ||||||||||| ||||||||||    
T  1891065 caatttagtccaagagtctttatttccatgttccttcataatccaaacatca 1891116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 3754650 - 3754599
Alignment:
Q  32 caatttaatccaagagtctttatttccatattccttcataagccaaacatca 83  Q
    ||||||| ||||||| ||||||||||||||||||||||||| ||||||||||    
T  3754650 caatttagtccaagactctttatttccatattccttcataacccaaacatca 3754599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 771500 - 771550
Alignment:
Q  32 caatttaatccaagagtctttatttccatattccttcataagccaaacatc 82  Q
    ||||||| ||||||||||| ||||||||||||||||||||| |||||||||    
T  771500 caatttagtccaagagtctgtatttccatattccttcataacccaaacatc 771550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 13498273 - 13498224
Alignment:
Q  33 aatttaatccaagagtctttatttccatattccttcataagccaaacatc 82  Q
    |||||| ||||||| ||||||||||||||||||||||||| |||||||||    
T  13498273 aatttagtccaagactctttatttccatattccttcataatccaaacatc 13498224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 2442089 - 2442039
Alignment:
Q  32 caatttaatccaagagtctttatttccatattccttcataagccaaacatc 82  Q
    ||||||| ||||||| |||||||||||||| |||||||||| |||||||||    
T  2442089 caatttagtccaagaatctttatttccatactccttcataatccaaacatc 2442039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 7942535 - 7942485
Alignment:
Q  32 caatttaatccaagagtctttatttccatattccttcataagccaaacatc 82  Q
    ||||||||||||||| |||||||| ||||| |||||||||| |||||||||    
T  7942535 caatttaatccaagactctttattaccatactccttcataatccaaacatc 7942485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 9608346 - 9608396
Alignment:
Q  33 aatttaatccaagagtctttatttccatattccttcataagccaaacatca 83  Q
    |||||| ||||||| ||| ||||||||||||||||||||| ||||||||||    
T  9608346 aatttagtccaagaatctatatttccatattccttcataacccaaacatca 9608396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 81
Target Start/End: Complemental strand, 2631407 - 2631358
Alignment:
Q  32 caatttaatccaagagtctttatttccatattccttcataagccaaacat 81  Q
    ||||||| ||||||| |||| |||||||||||||||||||| ||||||||    
T  2631407 caatttagtccaagactcttgatttccatattccttcataatccaaacat 2631358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 23197075 - 23197014
Alignment:
Q  19 aaggaagacaaatcaatttaatccaagagtctttatttccatattccttcataagccaaaca 80  Q
    |||||| || || ||||||| ||||||| |||| |||||||||||||||||| |||||||||    
T  23197075 aaggaatacgaaacaatttagtccaagattcttcatttccatattccttcatcagccaaaca 23197014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 2459317 - 2459277
Alignment:
Q  40 tccaagagtctttatttccatattccttcataagccaaaca 80  Q
    ||||||| ||||||||||||||||||||||||| |||||||    
T  2459317 tccaagactctttatttccatattccttcataatccaaaca 2459277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 23230983 - 23231031
Alignment:
Q  32 caatttaatccaagagtctttatttccatattccttcataagccaaaca 80  Q
    ||||||||||||||| |||| |||||||||||| ||||| |||||||||    
T  23230983 caatttaatccaagactcttcatttccatattctttcattagccaaaca 23231031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 83
Target Start/End: Original strand, 803227 - 803270
Alignment:
Q  40 tccaagagtctttatttccatattccttcataagccaaacatca 83  Q
    ||||||| ||||||||||||||||| ||||||| ||||||||||    
T  803227 tccaagactctttatttccatattctttcataacccaaacatca 803270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 1931155 - 1931206
Alignment:
Q  32 caatttaatccaagagtctttatttccatattccttcataagccaaacatca 83  Q
    ||||||| |||| |||||||||||||||| |||| |||||| ||||||||||    
T  1931155 caatttagtccaggagtctttatttccatgttccatcataacccaaacatca 1931206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 1940580 - 1940631
Alignment:
Q  32 caatttaatccaagagtctttatttccatattccttcataagccaaacatca 83  Q
    ||||||| |||| ||||||| |||||||| ||||||||||| ||||||||||    
T  1940580 caatttagtccacgagtcttgatttccatgttccttcataacccaaacatca 1940631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 7432055 - 7432106
Alignment:
Q  32 caatttaatccaagagtctttatttccatattccttcataagccaaacatca 83  Q
    ||||||| |||| || ||||||||||||||||||||||||  ||||||||||    
T  7432055 caatttagtccacgattctttatttccatattccttcatactccaaacatca 7432106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 956431 - 956381
Alignment:
Q  32 caatttaatccaagagtctttatttccatattccttcataagccaaacatc 82  Q
    |||||||  |||||| ||||| ||||||||||||||||||| |||||||||    
T  956431 caatttatgccaagactctttttttccatattccttcataatccaaacatc 956381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 968720 - 968670
Alignment:
Q  33 aatttaatccaagagtctttatttccatattccttcataagccaaacatca 83  Q
    |||||| |||| || ||||||||||||| ||||||||||| ||||||||||    
T  968720 aatttagtccatgactctttatttccatgttccttcataacccaaacatca 968670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 7324432 - 7324482
Alignment:
Q  32 caatttaatccaagagtctttatttccatattccttcataagccaaacatc 82  Q
    ||||||| ||||||| ||||||||||| || |||||||||| |||||||||    
T  7324432 caatttagtccaagactctttatttccgtagtccttcataatccaaacatc 7324482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 80
Target Start/End: Original strand, 7398174 - 7398228
Alignment:
Q  26 acaaatcaatttaatccaagagtctttatttccatattccttcataagccaaaca 80  Q
    ||||| ||||||||||||||| |||| ||||||||| |||||||| | |||||||    
T  7398174 acaaaacaatttaatccaagactcttcatttccatactccttcatcaaccaaaca 7398228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 37753346 - 37753396
Alignment:
Q  32 caatttaatccaagagtctttatttccatattccttcataagccaaacatc 82  Q
    ||||||| ||||||| ||||| ||||||||||||| ||||| |||||||||    
T  37753346 caatttagtccaagactctttctttccatattcctccataatccaaacatc 37753396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 82
Target Start/End: Complemental strand, 43992002 - 43991960
Alignment:
Q  40 tccaagagtctttatttccatattccttcataagccaaacatc 82  Q
    ||||||| ||| ||||||||||||||||||||| |||||||||    
T  43992002 tccaagactctatatttccatattccttcataatccaaacatc 43991960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 997623 - 997578
Alignment:
Q  35 tttaatccaagagtctttatttccatattccttcataagccaaaca 80  Q
    |||| ||||||| ||||||||||||||||||||||| | |||||||    
T  997623 tttagtccaagactctttatttccatattccttcattacccaaaca 997578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 1014013 - 1013968
Alignment:
Q  35 tttaatccaagagtctttatttccatattccttcataagccaaaca 80  Q
    |||| ||||||| ||||||||||||||||||||||| | |||||||    
T  1014013 tttagtccaagactctttatttccatattccttcattacccaaaca 1013968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 2686313 - 2686353
Alignment:
Q  32 caatttaatccaagagtctttatttccatattccttcataa 72  Q
    ||||||| ||||||| ||||| |||||||||||||||||||    
T  2686313 caatttattccaagactctttttttccatattccttcataa 2686353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 36577416 - 36577366
Alignment:
Q  32 caatttaatccaagagtctttatttccatattccttcataagccaaacatc 82  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  36577416 caatttaatccaagactctttatttccatattccttcataatccaaacatc 36577366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 32 - 90
Target Start/End: Original strand, 7160755 - 7160813
Alignment:
Q  32 caatttaatccaagagtctttatttccatattccttcataagccaaacatcagtaaaag 90  Q
    ||||||| ||||||| || ||||||||||| |||||||||||||||||||| |||||||    
T  7160755 caatttagtccaagaatcattatttccatactccttcataagccaaacatctgtaaaag 7160813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 79
Target Start/End: Original strand, 7168691 - 7168738
Alignment:
Q  32 caatttaatccaagagtctttatttccatattccttcataagccaaac 79  Q
    ||||||| ||||||| || |||||||||||||||||||||||||||||    
T  7168691 caatttagtccaagaatcgttatttccatattccttcataagccaaac 7168738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 7156193 - 7156243
Alignment:
Q  32 caatttaatccaagagtctttatttccatattccttcataagccaaacatc 82  Q
    |||||||  |||||| |||| ||||||||| ||||||||||||||||||||    
T  7156193 caatttagcccaagaatcttcatttccatactccttcataagccaaacatc 7156243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 7174382 - 7174424
Alignment:
Q  40 tccaagagtctttatttccatattccttcataagccaaacatc 82  Q
    ||||||| |||| |||||||||||||||||||||||| |||||    
T  7174382 tccaagaatcttgatttccatattccttcataagccagacatc 7174424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 6538884 - 6538843
Alignment:
Q  32 caatttaatccaagagtctttatttccatattccttcataag 73  Q
    ||||||| ||||||| |||||||||||||| |||||||||||    
T  6538884 caatttagtccaagaatctttatttccatactccttcataag 6538843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 9819831 - 9819876
Alignment:
Q  33 aatttaatccaagagtctttatttccatattccttcataagccaaa 78  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||    
T  9819831 aatttagtccaagagtctctatttccatattccttcataagccaaa 9819876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 9825517 - 9825562
Alignment:
Q  33 aatttaatccaagagtctttatttccatattccttcataagccaaa 78  Q
    |||||| ||||||||| | |||||||||||||||||||||||||||    
T  9825517 aatttagtccaagagtttctatttccatattccttcataagccaaa 9825562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 81
Target Start/End: Original strand, 24417487 - 24417536
Alignment:
Q  32 caatttaatccaagagtctttatttccatattccttcataagccaaacat 81  Q
    ||||||| ||||||| ||||||||||||||||| ||||||| ||||||||    
T  24417487 caatttagtccaagattctttatttccatattctttcataatccaaacat 24417536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 9703888 - 9703933
Alignment:
Q  33 aatttaatccaagagtctttatttccatattccttcataagccaaa 78  Q
    |||||| ||||| | ||| |||||||||||||||||||||||||||    
T  9703888 aatttagtccaaaaatctctatttccatattccttcataagccaaa 9703933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 1453841 - 1453881
Alignment:
Q  32 caatttaatccaagagtctttatttccatattccttcataa 72  Q
    ||||||| |||||||||||||||||||||| | ||||||||    
T  1453841 caatttattccaagagtctttatttccataatacttcataa 1453881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 1465533 - 1465573
Alignment:
Q  32 caatttaatccaagagtctttatttccatattccttcataa 72  Q
    ||||||| |||||||||||||||||||||| | ||||||||    
T  1465533 caatttattccaagagtctttatttccataatacttcataa 1465573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 80
Target Start/End: Complemental strand, 19119113 - 19119065
Alignment:
Q  32 caatttaatccaagagtctttatttccatattccttcataagccaaaca 80  Q
    ||||||| ||||||| |||| |||||||||||||||||| | |||||||    
T  19119113 caatttagtccaagactcttcatttccatattccttcatcaaccaaaca 19119065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 80
Target Start/End: Complemental strand, 19126407 - 19126359
Alignment:
Q  32 caatttaatccaagagtctttatttccatattccttcataagccaaaca 80  Q
    ||||||| ||||||| |||| |||||||||||||||||| | |||||||    
T  19126407 caatttagtccaagactcttcatttccatattccttcatcaaccaaaca 19126359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 89193 - 89142
Alignment:
Q  32 caatttaatccaagagtctttatttccatattccttcataagccaaacatca 83  Q
    ||||||| ||||||| ||||||||||||||||||||||||| ||||| ||||    
T  89193 caatttagtccaagactctttatttccatattccttcataacccaaatatca 89142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University