View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10174_low_26 (Length: 344)

Name: NF10174_low_26
Description: NF10174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10174_low_26
NF10174_low_26
[»] chr8 (1 HSPs)
chr8 (1-323)||(20170979-20171302)
[»] chr7 (1 HSPs)
chr7 (1-323)||(44392689-44393012)


Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 20170979 - 20171302
Alignment:
Q  1 agagacaaggagagaaacccatcttggagaaacagaacacatgcaaatgattcggtggcataagcattctagacacaacagagttgcacgtgtcctgctt 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20170979 agagacaaggagagaaacccatcttggagaaacagagcacatgcaaatgattcggtggcataagcattctagacacaacagagttgcacgtgtcctgctt 20171078  T
Q  101 ctccaacaaggagttctcagcctatataaaccattacacctcgagtttgatgaaagttgaagtggaagtttaacttgaactgggaaaaatgtgctctata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20171079 ctccaacaaggagttctcagcctatataaaccattacacctcgagtttgatgaaagttgaagtggaagtttaacttgaactgggaaaaatgtgctctata 20171178  T
Q  201 catcgatgcaattttatagagatat-aggtaggaatgaaattatttaagaaacaatgtgtgcagttaaagttttggtctcnnnnnnnggaacactcaacc 299  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||       |||||||||| ||    
T  20171179 catcgatgcaattttatagagatatgaggtaggaatgaaattatttaagaaacaatgtgtgtagttaaagttttggtctcaaaaaaaggaacactcagcc 20171278  T
Q  300 agaccatacggcataccatacctc 323  Q
    ||||||||||||||||||||||||    
T  20171279 agaccatacggcataccatacctc 20171302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 44392689 - 44393012
Alignment:
Q  1 agagacaaggagagaaacccatcttggagaaacagaacacatgcaaatgattcggtggcataagcattctagacacaacagagttgcacgtgtcctgctt 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44392689 agagacaaggagagaaacccatcttggagaaacagagcacatgcaaatgattcggtggcataagcattctagacacaacagagttgcacgtgtcctgctt 44392788  T
Q  101 ctccaacaaggagttctcagcctatataaaccattacacctcgagtttgatgaaagttgaagtggaagtttaacttgaactgggaaaaatgtgctctata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44392789 ctccaacaaggagttctcagcctatataaaccattacacctcgagtttgatgaaagttgaagtggaagtttaacttgaactgggaaaaatgtgctctata 44392888  T
Q  201 catcgatgcaattttatagagatat-aggtaggaatgaaattatttaagaaacaatgtgtgcagttaaagttttggtctcnnnnnnnggaacactcaacc 299  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||       |||||||||| ||    
T  44392889 catcgatgcaattttatagagatatgaggtaggaatgaaattatttaagaaacaatgtgtgtagttaaagttttggtctcaaaaaaaggaacactcagcc 44392988  T
Q  300 agaccatacggcataccatacctc 323  Q
    ||||||||||||||||||||||||    
T  44392989 agaccatacggcataccatacctc 44393012  T

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