View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10174_low_27 (Length: 340)
Name: NF10174_low_27
Description: NF10174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10174_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 1241355 - 1241031
Alignment:
| Q |
1 |
tgttcctgccttttctatgtctcttctcaatcactagttttatttcctaaaactcacaataataataataacaacaaaatcaacccaaaaaactatttgc |
100 |
Q |
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| T |
1241355 |
tgttcctaccttttctatgtctcttctcaatcactagttttatttcctaaaactcacaataataataataacaacaaaatcaacccaaaaaactattttc |
1241256 |
T |
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| Q |
101 |
catcttacttctatagcatctcaaaacatcccataattaatgtctcataaaaattaaccaattttagtctcaagaattgaacatcttctacaannnnnnn |
200 |
Q |
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| T |
1241255 |
cttcttacttctatagcctctcaaaacatccca----taatgtctcataaaaattaacctattttagtctcaagaattgaacatcttctacaa-tttttt |
1241161 |
T |
|
| Q |
201 |
nnnnaaaaaactcaatatgaaaccttcaacagaatcaaccaaggacacagccattgacattgataattcatcttccaaaagagtatctttctctgaccaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1241160 |
tttaaaaaaactcaatatgaaaccttcaacagaatcaaccaaggacacaaccattgacattgataattcatcttccaaaagagtatctttctctgaccaa |
1241061 |
T |
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| Q |
301 |
cagcaacagcaccaacacaatgttcctttg |
330 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
1241060 |
cagcaacagcaccaacacaatgttcctttg |
1241031 |
T |
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