View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
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Alignment Overview
Query: NF10174_low_27 (Length: 340)
Name: NF10174_low_27
Description: NF10174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 1241355 - 1241031
Alignment:
| Q | 1 | tgttcctgccttttctatgtctcttctcaatcactagttttatttcctaaaactcacaataataataataacaacaaaatcaacccaaaaaactatttgc | 100 | Q |
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| T | 1241355 | tgttcctaccttttctatgtctcttctcaatcactagttttatttcctaaaactcacaataataataataacaacaaaatcaacccaaaaaactattttc | 1241256 | T |
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| Q | 101 | catcttacttctatagcatctcaaaacatcccataattaatgtctcataaaaattaaccaattttagtctcaagaattgaacatcttctacaannnnnnn | 200 | Q |
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| T | 1241255 | cttcttacttctatagcctctcaaaacatccca----taatgtctcataaaaattaacctattttagtctcaagaattgaacatcttctacaa-tttttt | 1241161 | T |
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| Q | 201 | nnnnaaaaaactcaatatgaaaccttcaacagaatcaaccaaggacacagccattgacattgataattcatcttccaaaagagtatctttctctgaccaa | 300 | Q |
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| T | 1241160 | tttaaaaaaactcaatatgaaaccttcaacagaatcaaccaaggacacaaccattgacattgataattcatcttccaaaagagtatctttctctgaccaa | 1241061 | T |
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| Q | 301 | cagcaacagcaccaacacaatgttcctttg | 330 | Q |
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| T | 1241060 | cagcaacagcaccaacacaatgttcctttg | 1241031 | T |
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