View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10174_low_28 (Length: 337)
Name: NF10174_low_28
Description: NF10174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10174_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 18 - 292
Target Start/End: Original strand, 1030107 - 1030383
Alignment:
| Q |
18 |
aagaatattgcacgatgttgcaccactcattacaagaaaatctactatttgacaaggaagaaatccttgagaaaagtatcgtatgaaaatccttgtgaaa |
117 |
Q |
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| T |
1030107 |
aagaatattgcaggatgttgcaccactcactacaagaaaatctactatttgacaaagaagaaatccttgagaaaagtatcgtatgaaaatccttgtgaaa |
1030206 |
T |
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| Q |
118 |
caaacatttaccacggtttaaattacgatgga-agaccaaaactgacaacttttaaacataaagagattaagtccgcaaaatgnnnnnnncagggtatcg |
216 |
Q |
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| T |
1030207 |
caaacatttaccacggtttaaattacgatggatagaccaaaactaacaa-ttttaaacataaagagatcaagtccgcaaaatgaaaaaaaca-ggtatcg |
1030304 |
T |
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| Q |
217 |
aaactacaattaaacacttaaaattccat---nnnnnnngtacttttgttaattcacaaaaatattgttccattttaac |
292 |
Q |
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| T |
1030305 |
aaactacaattaaacacttaaaattccataaaaaaaaaagtacttttgttaattcacaaaaatattgttccattttaac |
1030383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 285 - 326
Target Start/End: Original strand, 1031010 - 1031051
Alignment:
| Q |
285 |
attttaaccaccatttacaattttgataatatattttcctat |
326 |
Q |
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| T |
1031010 |
attttaaccaccgtttacaattttgataatatattttcctat |
1031051 |
T |
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