View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10174_low_29 (Length: 337)
Name: NF10174_low_29
Description: NF10174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10174_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 16 - 330
Target Start/End: Original strand, 47475653 - 47475967
Alignment:
| Q |
16 |
aaacttgtaatctgaaccgtacgttttataacgttgcattgtactctataatctgaagtattgcataatcgaaaaactacaacactcactctgttgtcgg |
115 |
Q |
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| T |
47475653 |
aaacttgtaatctgaaccgtacgatttataacgttacattgtactctataatctgaagtattgcataatcgaaaaactacaacaatcactctgttgtcgg |
47475752 |
T |
|
| Q |
116 |
agacgtaggaccaattaaccaaactatgtgataaattgtttatgttcttgtgtgcatttatttgtttttattatagttaggttttcgtatctaacaaaag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47475753 |
agacgtaggaccaattaaccaaactatgtgataaattgtttatgttcttgtgtgcatttatttgtttttattatagttaggttttcgtatctaacaaaag |
47475852 |
T |
|
| Q |
216 |
tgtattttttggtgtaaatacgagtgtacatagttcttttcttaattgatcagtacacaacgatagaagaagtatatggtgcattcttaattgttaggat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47475853 |
tgtattttttggtgtaaatacgagtgtacatagttcttttcttaattgatcagtacacaacgatagaagaagtatatggtgcattcttaattgttaggat |
47475952 |
T |
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| Q |
316 |
acatggttcttctct |
330 |
Q |
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||||||||||||||| |
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| T |
47475953 |
acatggttcttctct |
47475967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 208 - 330
Target Start/End: Original strand, 24801949 - 24802071
Alignment:
| Q |
208 |
aacaaaagtgtattttttggtgtaaatacgagtgtacatagttcttttcttaattgatcagtacacaacgatagaagaagtatatggtgcattcttaatt |
307 |
Q |
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| T |
24801949 |
aacaaaagtgtattttttggtgtaaatacgagtgtacatagttcttttcttaattgatcagtacacaacgatagaagaagtatatggtgcattcttaatt |
24802048 |
T |
|
| Q |
308 |
gttaggatacatggttcttctct |
330 |
Q |
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| T |
24802049 |
gttaggatacatggttcttctct |
24802071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 24801784 - 24801910
Alignment:
| Q |
16 |
aaacttgtaatctgaaccgtacgttttataacgttgcattgtactctataatctgaagtattgcataatcgaaaaactacaacactcactctgttgtcgg |
115 |
Q |
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||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
24801784 |
aaacttgcaatctgaaccgtacgatttataacgttacattgtactctataatctgaagtattgcataatcgaaaaactacaacaatcactctgttgtcgg |
24801883 |
T |
|
| Q |
116 |
agacgtaggaccaattaaccaaactat |
142 |
Q |
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| T |
24801884 |
agacgtaggaccaattaaccaaactat |
24801910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 49 - 284
Target Start/End: Original strand, 47472444 - 47472690
Alignment:
| Q |
49 |
ttgcattgtactctataatctgaagtattgcataatcgaaaaactacaacactcactctgttgtcggagacgtaggaccaattaaccaaactatgtgata |
148 |
Q |
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||||||| ||||||||||||| ||||||| ||||||||||||| |||| || ||||| || |||||||||||||||| ||||| |||| | || |||||| |
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| T |
47472444 |
ttgcattatactctataatcttaagtattacataatcgaaaaattacagcagtcactttgctgtcggagacgtaggaacaattgaccagattacgtgata |
47472543 |
T |
|
| Q |
149 |
aattgtttatgttcttgtgtgc----atttatttgtttttattatagttaggttttcgtatctaacaaaagtgta-----ttttttggtgtaaatac--g |
237 |
Q |
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||| ||||||||||| ||||| ||||||||||||| ||| ||||| |||||| | | |||||| || || |||||||||||||| || | |
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| T |
47472544 |
aatcatttatgttcttctgtgcatttatttatttgttttctttagagttaagttttcttttttaacaagtgtatacatagttttttggtgtaaagacaag |
47472643 |
T |
|
| Q |
238 |
agtgtacatagttcttttcttaattgatcagtacacaacgatagaag |
284 |
Q |
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||||||||||||||| |||| |||||||||| |||||||||||||| |
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| T |
47472644 |
agtgtacatagttctactcttgattgatcagtgcacaacgatagaag |
47472690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 174
Target Start/End: Complemental strand, 8072883 - 8072784
Alignment:
| Q |
75 |
attgcataatcgaaaaactacaacactcactctgttgtcggagacgtaggaccaattaaccaaactatgtgataaattgtttatgttcttgtgtgcattt |
174 |
Q |
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|||||||||| ||||||||||| || |||| || ||||||| ||||||| |||||| | ||||||||||| ||| ||| ||||||||||||||||| |
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| T |
8072883 |
attgcataatagaaaaactacatcagccactttgctgtcggaaacgtaggcacaattagtcgaactatgtgatcaatcatttgtgttcttgtgtgcattt |
8072784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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