View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10174_low_3 (Length: 578)
Name: NF10174_low_3
Description: NF10174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10174_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 18 - 561
Target Start/End: Complemental strand, 6265508 - 6264969
Alignment:
| Q |
18 |
aggtcatgggtaagtttttgtttatttgagtgatacatgggatagcttgcgagatcgtgatactttcgcgagattttattcgcggtaagtagcaatttcc |
117 |
Q |
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| T |
6265508 |
aggtcatgggtaagtttttgtttatttgagtgatacatggggtagcttacgagatcgtgatactttcgcgagattttattcgcggtaagtagcaatttcc |
6265409 |
T |
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| Q |
118 |
tttgagaaaattaatgagaagannnnnnnnnatcataacaaaactaaagaatgacatgagggacagagattagccctgccccgttaaaagttatgtgtct |
217 |
Q |
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| T |
6265408 |
tttgagaaaattaatgagaagatttttttttatcataacaaaactaaagaatgacatgagggacagagattagccctgccccgttaaaagttatgtgtct |
6265309 |
T |
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| Q |
218 |
attgttggattttgtttataactccaatatgttaatgtgtaaagattttaaattttaatccgaaactttttcattttaaaaggagaattggtggaatcgt |
317 |
Q |
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| T |
6265308 |
attgttggattttgtttataactccaat--gttaatgtgtaaatattttaaattttaatccgaaactttttcattttaaaaggagaattggtggaatcgt |
6265211 |
T |
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| Q |
318 |
ttaatgtnnnnnnnnnnnnnntctttaaaaataaattactatggtgcaacatttctcatgatatatgataccaatttaactctaaatacttgattatgag |
417 |
Q |
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| T |
6265210 |
ttaatgtaaaaaaaaaaat--tctttaaaaaaaaattactatggtgcaacatttctcatgatatatgataccaatttaactctaaatacttgattatgag |
6265113 |
T |
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| Q |
418 |
acacagtactatacccaccggcagaagtgactgaaccatccatacgtatatttggcttcatatccattttacaaaactttaaagacaacatacaaaaatt |
517 |
Q |
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| T |
6265112 |
acacagtactatacccaccggcagaagtgactgaaccatccatacgtatatttggcttcatatccattttacaaaactttaaagacaacatacaaaaatt |
6265013 |
T |
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| Q |
518 |
tgaatcaacagaagttgaagacataaattacaaaggtgcaaagt |
561 |
Q |
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| T |
6265012 |
tgaatcaacagaagtttaagacataaattacaaaggtgcaaagt |
6264969 |
T |
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