View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10174_low_31 (Length: 335)
Name: NF10174_low_31
Description: NF10174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10174_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 2356403 - 2356723
Alignment:
| Q |
1 |
aaaacatttagtgcaaccaatcaaatttctaaatatataatgcatttgcctatataatgaagcagttcaattcacagactaaaatatgaagggaaaatgc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
2356403 |
aaaacatttagtgcaaccaatcaaatttctaaatatataatgcatttgcctatataatgaagcagttcaattcacagacaaaaatataaagggaaaatgc |
2356502 |
T |
|
| Q |
101 |
caagaaagaaaatcaaaataggaattcctttcggcgaacagcccatcaagcaaatcaacaaagttatttccataaaagagctaatttcaaatttaactat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
2356503 |
caagaaagaaaatcaaaataggaattcctttcggcgaatagtccatcaagcaaatcaacagagttatttccataaaagagctaagttcaaatttaactat |
2356602 |
T |
|
| Q |
201 |
agtgaagaataatatcaaacaaaaccaaccaacacagtaatagtgaaatagccacgacatcaaagtacctgctacaacattgaatgccgcaatttcagtt |
300 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
2356603 |
agtgaagaataatatcaaacaaatccaaccaacacagtaatagtgaaatagccacgacatcaaagtacctgctacaacattgattgccacaatttcagtt |
2356702 |
T |
|
| Q |
301 |
ggcctctccgggatcataatg |
321 |
Q |
| |
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||||||||||||||||||||| |
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| T |
2356703 |
ggcctctccgggatcataatg |
2356723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 4 - 316
Target Start/End: Complemental strand, 2353021 - 2352709
Alignment:
| Q |
4 |
acatttagtgcaaccaatcaaatttctaaatatataatgcatttgcctatataatgaagcagttcaattcacagactaaaatatgaagggaaaatgccaa |
103 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||| ||| ||||||||||||| |
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| T |
2353021 |
acatttagtgcaaccaatcaaatttctaaatatataatgcattttcctatataatgaagcagttcagttcacaaactaaaatctgaggggaaaatgccaa |
2352922 |
T |
|
| Q |
104 |
gaaagaaaatcaaaataggaattcctttcggcgaacagcccatcaagcaaatcaacaaagttatttccataaaagagctaatttcaaatttaactatagt |
203 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||| || |||||||||||| ||||||||| ||||||||||||||| |
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| T |
2352921 |
gaaagaaaatcaaaatattaattcctttcggcaaacagtccatcaagcaaatcaacggagatatttccataaatgagctaattgaaaatttaactatagt |
2352822 |
T |
|
| Q |
204 |
gaagaataatatcaaacaaaaccaaccaacacagtaatagtgaaatagccacgacatcaaagtacctgctacaacattgaatgccgcaatttcagttggc |
303 |
Q |
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||||||||||| ||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2352821 |
aaagaataatataaaacaaaaccaactaacacagtaattgtgaaatagccatgacatcaaagtacctgctacaacattgaacgccgcaatttcagttggc |
2352722 |
T |
|
| Q |
304 |
ctctccgggatca |
316 |
Q |
| |
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||||||||||||| |
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| T |
2352721 |
ctctccgggatca |
2352709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 202 - 321
Target Start/End: Original strand, 3500834 - 3500953
Alignment:
| Q |
202 |
gtgaagaataatatcaaacaaaaccaaccaacacagtaatagtgaaatagccacgacatcaaagtacctgctacaacattgaatgccgcaatttcagttg |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3500834 |
gtgaagaataatatcaaacaaaaccaaccaacacagtaatattgaaatagccatgacatcaaagtacctgctacaacattgaatgccgcgatttcagttg |
3500933 |
T |
|
| Q |
302 |
gcctctccgggatcataatg |
321 |
Q |
| |
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||||||| ||||||| |||| |
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| T |
3500934 |
gcctctctgggatcacaatg |
3500953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 5 - 176
Target Start/End: Original strand, 3512450 - 3512620
Alignment:
| Q |
5 |
catttagtgcaaccaatcaaatttctaaatatataatgcatttgcctatataatgaagcagttcaattcacagactaaaatatgaagggaaaatgccaag |
104 |
Q |
| |
|
|||| |||||||| ||| ||||||| ||||||||||| |||| |||||| ||||||| ||||||| |||| ||||||||| ||| |||||||||||||| |
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| T |
3512450 |
cattaagtgcaactaataaaatttccaaatatataattcattagcctatttaatgaaacagttcagttcagagactaaaagctgaggggaaaatgccaag |
3512549 |
T |
|
| Q |
105 |
aaagaaaatcaaaataggaattcctttcggcgaacagcccatcaagcaaatcaacaaagttatttccataaa |
176 |
Q |
| |
|
|||||| |||||||| || ||||| | |||||||| ||||||||||||||||| || |||||||||||| |
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| T |
3512550 |
aaagaacatcaaaattttaactccttac-gcgaacagtccatcaagcaaatcaacggagatatttccataaa |
3512620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 219 - 321
Target Start/End: Original strand, 3513172 - 3513274
Alignment:
| Q |
219 |
acaaaaccaaccaacacagtaatagtgaaatagccacgacatcaaagtacctgctacaacattgaatgccgcaatttcagttggcctctccgggatcata |
318 |
Q |
| |
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||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| || |||||| | ||| |||||||||||||||| ||||||| | |
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| T |
3513172 |
acaaaactaaccaacacagtaatagtgaaatagctgcgacatcaaagtacctgctacgacgttgaatactgcattttcagttggcctctctgggatcaca |
3513271 |
T |
|
| Q |
319 |
atg |
321 |
Q |
| |
|
||| |
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|
| T |
3513272 |
atg |
3513274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 3500174 - 3500239
Alignment:
| Q |
5 |
catttagtgcaaccaatcaaatttctaaatatataatgcatttgcctatataatgaagcagttcaa |
70 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||| |
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| T |
3500174 |
catttagtgcaaccaatcaaatttccaaatatataatgcattttcctatataatgaagcaattcaa |
3500239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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