View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10174_low_33 (Length: 322)
Name: NF10174_low_33
Description: NF10174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10174_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 3 - 319
Target Start/End: Original strand, 15724431 - 15724750
Alignment:
| Q |
3 |
agatcactatttattcatagctttctacaatctaaaccttaaaaggaatccaaattaacaagtcaaatatgaaatattacctggatttggcacaggagaa |
102 |
Q |
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| T |
15724431 |
agatcactatttattcatagttttctacaatctaaaccttgaaaggaatccaaattaccaagtcaaatatgaaatattacctggatttggcacaggagaa |
15724530 |
T |
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| Q |
103 |
---gatcctgtattctcagctaactgatagaacatttgatcatcaaatctaatcccacaacttggagctacaagagcccatgttaccttagtcccacaac |
199 |
Q |
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| T |
15724531 |
gaagatcctgtattctcagttaactgatagaacaattgatcatcaaatctaatcccacaacttggagctacaagagcccatgttaccttagtcccacaac |
15724630 |
T |
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| Q |
200 |
acagacgaattttgtcgaacaatgtctccaaacactctgtgcacccatcattgttaaggtctccagaacactgaaccaaaccataccttttctccgtatc |
299 |
Q |
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| T |
15724631 |
acagatgaattttgtcgaacaatgtctccaaacactctgtgcacccatcattgttaaggtctccagaacactgaaccaaaccgtaccttttctccgtatc |
15724730 |
T |
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| Q |
300 |
actccaattcatctcactcg |
319 |
Q |
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| T |
15724731 |
actccaattcaactcactcg |
15724750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 307
Target Start/End: Original strand, 15713835 - 15713914
Alignment:
| Q |
228 |
caaacactctgtgcacccatcattgttaaggtctccagaacactgaaccaaaccataccttttctccgtatcactccaat |
307 |
Q |
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| T |
15713835 |
caaacactctttacatccattattatcaagatctccagcacactgaaccaaaccatatcttttctcggtatcactccaat |
15713914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 306
Target Start/End: Original strand, 15801696 - 15801771
Alignment:
| Q |
231 |
acactctgtgcacccatcattgttaaggtctccagaacactgaaccaaaccataccttttctccgtatcactccaa |
306 |
Q |
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| T |
15801696 |
acactctttgcacccatccttactaaggtctctattacactgcaccaaaccataccttttctcggtgtcactccaa |
15801771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 308
Target Start/End: Original strand, 15793891 - 15793974
Alignment:
| Q |
225 |
ctccaaacactctgtgcacccatcattgttaaggtctccagaacactgaaccaaaccataccttttctccgtatcactccaatt |
308 |
Q |
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| T |
15793891 |
ctccaaacactgtctacacccatccttactaaggtctctattacactgcaccataccataccttttctcagtgtcactccaatt |
15793974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 15705669 - 15705750
Alignment:
| Q |
120 |
taactgatagaacatttgatcatcaaatctaatcccacaacttggagctacaagagcccatgttaccttagtcccacaacac |
201 |
Q |
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||||||| |||| ||||||||||||| | ||||||||||||||| |||||| |||||| ||||| |||||||||||| |
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| T |
15705669 |
taactgaaggaacttttgatcatcaaacttgatcccacaacttggaactacaacttcccatgcaacctttgtcccacaacac |
15705750 |
T |
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