View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10174_low_35 (Length: 315)
Name: NF10174_low_35
Description: NF10174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10174_low_35 |
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| [»] scaffold0035 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 299
Target Start/End: Original strand, 5823180 - 5823461
Alignment:
| Q |
18 |
aattgggcccaattagctcatgacatctccactggaaccctaaaccctaaagtcacagacccttcaatcaaagaatgcatgtccaaaatattgaaacctg |
117 |
Q |
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| T |
5823180 |
aattgggcccaattagctcatgacatctccactggaaccctaaaccctaaaatcacagacccttcaatcaaagaatgcatgtccaaaatattgaaacctg |
5823279 |
T |
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| Q |
118 |
accctgaacaagcaaatttcataacaaaagaatgttctggagaaaattgggaacgtataatcccaagaatttggcctaacacaaagtaccttgaggttat |
217 |
Q |
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| T |
5823280 |
accctgaacaagcaaatttcataacaaaagaatgttctggagaaaattgggaacgtataatcccaagaatttggcctaacacaaagtaccttgaggttat |
5823379 |
T |
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| Q |
218 |
tgtcactggtgctatggctcagtacattccaacccttgattattacagtggtaacctaccaaagccatgtacaatatatgct |
299 |
Q |
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| T |
5823380 |
tgtcactggtgctatggctcagtacattcctacccttgattattatagtggtaacctaccaaaaccatgtacaatatatgct |
5823461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 51 - 299
Target Start/End: Complemental strand, 5832853 - 5832605
Alignment:
| Q |
51 |
ggaaccctaaaccctaaagtcacagacccttcaatcaaagaatgcatgtccaaaatattgaaacctgaccctgaacaagcaaatttcataacaaaagaat |
150 |
Q |
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| T |
5832853 |
ggaaccctaaacccaaaaatcactgatccttctatcaaacagtgcatgtcgaaaatacttaaaccgaatcctgaactcgcgaaattcgttacaaaagaat |
5832754 |
T |
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| Q |
151 |
gttctggagaaaattgggaacgtataatcccaagaatttggcctaacacaaagtaccttgaggttattgtcactggtgctatggctcagtacattccaac |
250 |
Q |
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| T |
5832753 |
gttcaggagacaattgggaacgtataatcccaagaatctggcctaacacaaagtatcttgaagttattgtcactggtgctatggctcagtacattcctac |
5832654 |
T |
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| Q |
251 |
ccttgattattacagtggtaacctaccaaagccatgtacaatatatgct |
299 |
Q |
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| T |
5832653 |
ccttgattattacagtggtaaccttccaaaaccatgtacaatgtatgct |
5832605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 159 - 269
Target Start/End: Original strand, 78088 - 78198
Alignment:
| Q |
159 |
gaaaattgggaacgtataatcccaagaatttggcctaacacaaagtaccttgaggttattgtcactggtgctatggctcagtacattccaacccttgatt |
258 |
Q |
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| T |
78088 |
gaaaattgggaaggaataatcataaagatttggcctaacaccaaatatttagatgtcattgtaactggtgctatggctcaatacattccaacacttaatt |
78187 |
T |
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| Q |
259 |
attacagtggt |
269 |
Q |
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| T |
78188 |
actacagtggt |
78198 |
T |
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