View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10174_low_37 (Length: 302)
Name: NF10174_low_37
Description: NF10174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10174_low_37 |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 47807941 - 47807658
Alignment:
| Q |
1 |
agagccaagaatgaatacatgttttgttatatcctcgtgaagacttgtagccttctcttgaaaatccacctgccaatgcagacagggaaacaaagtagtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47807941 |
agagccaagaatgaatacatgttttgttatatcctcgtgaagacttgtagccttctcttgaaaatccacctgccaatgcagacagggaaacaaagtagtt |
47807842 |
T |
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| Q |
101 |
caaattttccgctatatatttaagtnnnnnnnnnnnnnnnncaattcaaaatgtcacgatagtcgccgaatgacaacttaaaacaatgacacggttttac |
200 |
Q |
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| T |
47807841 |
caaattttccgctatatatttaagtaaaaataaaataaaaacaattcaacgtgtcacgatagtcgccgaatgacaacttaaaacaatgacacggttttac |
47807742 |
T |
|
| Q |
201 |
tgtcaaactgctacaagaataagtagtaagaatgttattttggatcacactaattttcactattttcaattgctgtttcagata |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47807741 |
tgtcaaactgctacaagaataagtagtaagaatgttattttggatcacactaattttcactattttcaattgctgtttcagata |
47807658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 47805204 - 47805085
Alignment:
| Q |
1 |
agagccaagaatgaatacatgttttgttatatcctcgtgaagacttgtagccttctcttgaaaatccacctgccaatgcagacagggaaacaaagtagtt |
100 |
Q |
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|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||| ||||||| |||||||| |||| |||| |
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| T |
47805204 |
agagtcaagaatgaatacatgtttcgttatatcctcgtgaagacttgtagccttctcttgaagatcctccttccaatgccagcagggaaa-aaagaagtt |
47805106 |
T |
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| Q |
101 |
caaattttccgctatatattt |
121 |
Q |
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|||| |||||||||||||| |
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| T |
47805105 |
aaaatcatccgctatatattt |
47805085 |
T |
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