View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10174_low_38 (Length: 301)
Name: NF10174_low_38
Description: NF10174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10174_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 146 - 277
Target Start/End: Original strand, 5822841 - 5822977
Alignment:
| Q |
146 |
attttatcaaataacatttcttaatttggatgaaat-----aggtacgtgcctaatttggacaagggtaaggcacttcacttccttttcatcaaagcaga |
240 |
Q |
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| T |
5822841 |
attttatcaactaacatttcttaatttggttgaattgaattaggtatgtgcctaatttggacaagggtaaggcacttcacttccttttcatcaaagcaga |
5822940 |
T |
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| Q |
241 |
aacaaaaactccaagtgggttagtggcacgtccagtt |
277 |
Q |
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| T |
5822941 |
aacaaaaactccaagtggattagtggcacgtccagtt |
5822977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 195 - 301
Target Start/End: Complemental strand, 5833182 - 5833076
Alignment:
| Q |
195 |
atttggacaagggtaaggcacttcacttccttttcatcaaagcagaaacaaaaactccaagtgggttagtggcacgtccagttctaacagcctactacaa |
294 |
Q |
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| T |
5833182 |
atttggacaaaggaaaagcacttcactttcttttcatcaaagcagaaacaaaaactccaagtgggttagtggcacgtccagttctaacagcctactacaa |
5833083 |
T |
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| Q |
295 |
aagtgaa |
301 |
Q |
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| T |
5833082 |
aagtgaa |
5833076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 16256678 - 16256614
Alignment:
| Q |
17 |
aataatcaaattaggaggagttataaaattgaattgcatccaattcatcacctccatccaaactt |
81 |
Q |
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| T |
16256678 |
aataatcaaatcaggaggagtaataaaattgaattgtatccaattcatcacctccctctaaactt |
16256614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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