View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10174_low_43 (Length: 285)
Name: NF10174_low_43
Description: NF10174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10174_low_43 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 274
Target Start/End: Original strand, 24400408 - 24400664
Alignment:
| Q |
18 |
atttatgatgatgatggacgtcccaaaaggacaggtaaaattctctatagcatcataaccaattgattttcatatacttgaatttgaatactgaagtttt |
117 |
Q |
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| T |
24400408 |
atttatgatgatgacggacgtgccaaaaggacaggtaaaattctctatagcatcataaccaattgattttcatatacttgaatttgaatactgaagtttt |
24400507 |
T |
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| Q |
118 |
attcgacataaattctgcaggaaatgtaaaaagtgctgtggctcatatcatcacagctgttattggttctggtgttttgtctttggcatggagtatttct |
217 |
Q |
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| T |
24400508 |
attcgggataaattctgcaggaaatgtaaaaagtgctgtggctcatatcatcacagctgttattggttctggtgttttgtctttggcatggagtatttct |
24400607 |
T |
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| Q |
218 |
caattaggatggattggagggccacttgccttgttttcttgtgcaatagctacctat |
274 |
Q |
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| T |
24400608 |
caattaggatggattggagggccacttgccttgttttcttgtgcaatagctacctat |
24400664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 20 - 280
Target Start/End: Original strand, 24377566 - 24377827
Alignment:
| Q |
20 |
ttatgatgatgatggacgtcccaaaaggacaggtaaaattctctatagcatcataaccaattgattttcatatacttgaatttgaatactgaagttttat |
119 |
Q |
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| T |
24377566 |
ttatgatgatgatggacatgccaaaaggactggtaaaattctaaattgcttcataaccaattcattttcatatgcatgcatttgaatactaagcttttat |
24377665 |
T |
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| Q |
120 |
tcgac-ataaattctgcaggaaatgtaaaaagtgctgtggctcatatcatcacagctgttattggttctggtgttttgtctttggcatggagtatttctc |
218 |
Q |
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| T |
24377666 |
cctgctacaaattctgcaggaaatttaaagagtgccttggctcatatcatcactggtgttatcgggtctggtgttttgtcattggcatggagtactgctc |
24377765 |
T |
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| Q |
219 |
aattaggatggattggagggccacttgccttgttttcttgtgcaatagctacctatgcttct |
280 |
Q |
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| T |
24377766 |
aactaggatggattggagggccacttgcattactttcttgtgcaatagctacctatgtttct |
24377827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 133 - 266
Target Start/End: Original strand, 24412972 - 24413105
Alignment:
| Q |
133 |
tgcaggaaatgtaaaaagtgctgtggctcatatcatcacagctgttattggttctggtgttttgtctttggcatggagtatttctcaattaggatggatt |
232 |
Q |
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| T |
24412972 |
tgcaggaaatttaaagagtgctgtggctcatatcatcacagcagttattggttctggtgttctgtcattggcatggagtactgctcaattaggatggatt |
24413071 |
T |
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| Q |
233 |
ggagggccacttgccttgttttcttgtgcaatag |
266 |
Q |
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| T |
24413072 |
ggaggaccagttaccttgctttgttgtgcaatag |
24413105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 133 - 266
Target Start/End: Complemental strand, 24421069 - 24420936
Alignment:
| Q |
133 |
tgcaggaaatgtaaaaagtgctgtggctcatatcatcacagctgttattggttctggtgttttgtctttggcatggagtatttctcaattaggatggatt |
232 |
Q |
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|||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||| | ||||||||||||||||| |
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| T |
24421069 |
tgcaggaaatttaaagagtgctgtggctcatatcatcacagcagttattggttctggtgttctgtcattggcatggagtactgctcaattaggatggatt |
24420970 |
T |
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| Q |
233 |
ggagggccacttgccttgttttcttgtgcaatag |
266 |
Q |
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| T |
24420969 |
ggaggaccagttaccttgctttgttgtgcaatag |
24420936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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