View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10174_low_44 (Length: 283)

Name: NF10174_low_44
Description: NF10174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10174_low_44
NF10174_low_44
[»] chr4 (1 HSPs)
chr4 (1-283)||(52863924-52864206)


Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 52864206 - 52863924
Alignment:
Q  1 agacagcaagattaactggttaagttttgaagttacttgacttcgatcttgagaactacgcctacgcctctctaaacccttttcatatggccacggcggt 100  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  52864206 agacagcaaggttaactggttaagtttttaagttacttgacttcgatcttcagaactacgcctacgcctctctaaacccttttcatatggccacggcggt 52864107  T
Q  101 agagccaattccaaacggcactcttcaatcagaatcatatacaatctttgacgccgccgcaaatcctacggatgaatctgaatccgagaagagatggcca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  52864106 agagccaattccaaacggcactcttcaatcagaatcatatacaatctttgacgccgccgcgaatcctacggatgaatctgaatccgagaagagatggcca 52864007  T
Q  201 ggttggcctggtcactgtgttttccggctaattgttcccgttgttaaagttggcatcatcataggccgtaaaggggaattgat 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52864006 ggttggcctggtcactgtgttttccggctaattgttcccgttgttaaagttggcatcatcataggccgtaaaggggaattgat 52863924  T

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