View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10174_low_46 (Length: 275)
Name: NF10174_low_46
Description: NF10174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10174_low_46 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 17 - 257
Target Start/End: Complemental strand, 46125070 - 46124830
Alignment:
| Q |
17 |
gaacaatgtgagtatgtgacaacaaaattacgctctatcggtagtctatataactctcatttgacaccagtgtgacatattcaataaccttaatgaaaat |
116 |
Q |
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| T |
46125070 |
gaacaatgtgagtatgtgacaacaaaattacgctctatcggtagtctatataactctcatttgacaccagtgtgacatattcaataaccttaatgaaaat |
46124971 |
T |
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| Q |
117 |
ataattagaggttcctaaaataattagatagtaacacatctttatttttacctgagtctgagcatcatcaccagaagcaatatctcctagaatctccaga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46124970 |
ataattagaggttcctaaaataattagatagtaacacatctttatttttacctgagtctgagcatcatcaccagaagcaatatctcctagaatctccaga |
46124871 |
T |
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| Q |
217 |
gccggcacagcaacttttgactccggatacctgtatcaggg |
257 |
Q |
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| T |
46124870 |
gccggcacaacaacttttgactccggatacctgtatcaggg |
46124830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 30 - 258
Target Start/End: Complemental strand, 46703853 - 46703625
Alignment:
| Q |
30 |
atgtgacaacaaaattacgctctatcggtagtctatataactctcatttgacaccagtgtgacatattcaataaccttaatgaaaatataattagaggtt |
129 |
Q |
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| T |
46703853 |
atgtgacaacaaaattatgctctctcagtagcctatataactctcattttacaccagtgtgacatgttcaacaaccttaatgacaatatgtttagaggtt |
46703754 |
T |
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| Q |
130 |
cctaaaataattagatagtaacacatctttatttttacctgagtctgagcatcatcaccagaagcaatatctcctagaatctccagagccggcacagcaa |
229 |
Q |
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| T |
46703753 |
cctaaaatcattagatagttacacatctttattattacctgagtctgagcatcattaccagaagcaatttctcctagaacctgcagagcaggcacaacaa |
46703654 |
T |
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| Q |
230 |
cttttgactccggatacctgtatcagggt |
258 |
Q |
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| T |
46703653 |
cttttgactccggatacctgtaccagggt |
46703625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 30 - 257
Target Start/End: Complemental strand, 46131017 - 46130811
Alignment:
| Q |
30 |
atgtgacaacaaaattacgctctatcggtagtctatataactctcatttgacaccagtgtgacatattcaataaccttaatgaaaatataattagaggtt |
129 |
Q |
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||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
46131017 |
atgtgacaacaaaattatgctctctcagtagtctatataactctcatttgacaccagtgtgaca---------------------atatgattagaggtt |
46130939 |
T |
|
| Q |
130 |
cctaaaataattagatagtaacacatctttatttttacctgagtctgagcatcatcaccagaagcaatatctcctagaatctccagagccggcacagcaa |
229 |
Q |
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|||||||| ||||||| | ||||||||| ||||||||||||||||||||||||| || | ||||||| ||||||||| | |||||| | ||| ||| |
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| T |
46130938 |
cctaaaatcattagatgattacacatcttcatttttacctgagtctgagcatcattacgacaagcaatttctcctagagcgtgcagagcagtcactacaa |
46130839 |
T |
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| Q |
230 |
cttttgactccggatacctgtatcaggg |
257 |
Q |
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||| ||||| ||||||||| |||||||| |
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| T |
46130838 |
cttctgacttcggatacctttatcaggg |
46130811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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