View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10174_low_49 (Length: 259)

Name: NF10174_low_49
Description: NF10174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10174_low_49
NF10174_low_49
[»] chr5 (1 HSPs)
chr5 (3-240)||(36564827-36565062)
[»] chr1 (1 HSPs)
chr1 (72-240)||(26787699-26787867)
[»] scaffold0005 (1 HSPs)
scaffold0005 (70-231)||(225723-225886)
[»] chr4 (1 HSPs)
chr4 (70-231)||(14591492-14591655)


Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 3 - 240
Target Start/End: Complemental strand, 36565062 - 36564827
Alignment:
Q  3 ttgaaaataggacatatttatatcttttcttgtactttctataggctccttttatttatatttttaattgagaactgctatatccaacaaaaattgcatc 102  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  36565062 ttgaaaataggacat--ttatatcttttcttgtactttctataggctccttttatttatatttttaattgagaactgctatatccaacgaaaattgcatc 36564965  T
Q  103 acgaatgagtcacgagaattgcgacaatcaattgaatttgttcatgagcagaaaacatattggttgggctgctaagttagcattaaacattttgccacgt 202  Q
    |||||||| |||| ||||||||||||| ||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||    
T  36564964 acgaatgaatcacaagaattgcgacaaccaattgaatttgttcatgagcagaaaaaatgttggttgggctgttaagttagcattaaacattttgccacgt 36564865  T
Q  203 gctttcgggatgatttcgttgtctaatatctcgctata 240  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  36564864 gcttttgggatgatttcgttgtctaatatctcgctata 36564827  T

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Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 72 - 240
Target Start/End: Original strand, 26787699 - 26787867
Alignment:
Q  72 gagaactgctatatccaacaaaaattgcatcacgaatgagtcacgagaattgcgacaatcaattgaatttgttcatgagcagaaaacatattggttgggc 171  Q
    |||||||||||||||||   ||||||||||| ||||||| |||||||||||||||||  ||||||||||||||||||||| ||||||||  |||||||||    
T  26787699 gagaactgctatatccagtgaaaattgcatcgcgaatgaatcacgagaattgcgacagccaattgaatttgttcatgagcggaaaacatgctggttgggc 26787798  T
Q  172 tgctaagttagcattaaacattttgccacgtgctttcgggatgatttcgttgtctaatatctcgctata 240  Q
    |||||| ||||||| |||||||||||||||||||||||||||||  ||  |||||||||||||||||||    
T  26787799 tgctaaattagcatcaaacattttgccacgtgctttcgggatgaagtctctgtctaatatctcgctata 26787867  T

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Target: scaffold0005 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 70 - 231
Target Start/End: Complemental strand, 225886 - 225723
Alignment:
Q  70 ttgagaactgctatatccaacaaaaattgcatcacgaatgagtcacgagaattgcgacaatcaattgaatttgttcatgagcagaaaacatattggttgg 169  Q
    ||||||||| |||||||||   |||| |||||| | ||||| |||||||||||||||||| ||||| ||||||||||||||| |||||| | |||| |||    
T  225886 ttgagaactcctatatccagggaaaactgcatcgcaaatgaatcacgagaattgcgacaaccaattaaatttgttcatgagcggaaaacttgttggctgg 225787  T
Q  170 gctgctaagttagcattaaacattttgcca--cgtgctttcgggatgatttcgttgtctaatat 231  Q
    |||||||||||||||| ||||||||| |||  ||||||||| | ||||||||||||||||||||    
T  225786 gctgctaagttagcatcaaacattttaccacgcgtgctttcagaatgatttcgttgtctaatat 225723  T

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Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 70 - 231
Target Start/End: Original strand, 14591492 - 14591655
Alignment:
Q  70 ttgagaactgctatatccaacaaaaattgcatcacgaatgagtcacgagaattgcgacaatcaattgaatttgttcatgagcagaaaacatattggttgg 169  Q
    ||||||||| |||||||||   |||| |||||| | ||||| |||||||||||||||||| ||||| ||||||||||||||| |||||| | |||| |||    
T  14591492 ttgagaactcctatatccagggaaaactgcatcgcaaatgaatcacgagaattgcgacaaccaattaaatttgttcatgagcggaaaacttgttggctgg 14591591  T
Q  170 gctgctaagttagcattaaacattttgcca--cgtgctttcgggatgatttcgttgtctaatat 231  Q
    |||||||||||||||| ||||||||| |||  ||||||||| | ||||||||||||||||||||    
T  14591592 gctgctaagttagcatcaaacattttaccacgcgtgctttcagaatgatttcgttgtctaatat 14591655  T

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