View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10174_low_5 (Length: 564)
Name: NF10174_low_5
Description: NF10174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10174_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 148 - 548
Target Start/End: Original strand, 36835480 - 36835882
Alignment:
| Q |
148 |
gccgggattccacagcatattcctgggaatgttccatttaatctataatggagtaatcattaacctattcaatactactataatggtagtaataattatg |
247 |
Q |
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| T |
36835480 |
gccgggattccacagcatattcctgggaatgttccatttaatctataatggagtaatcattaacctattcaatactactataatggtaataataattatg |
36835579 |
T |
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| Q |
248 |
aagtatttagattaacaatcattttaacttgttaatttcaaaactataccacagctaaactattgttttttaaaggagctaaactcatttttatagcttt |
347 |
Q |
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| T |
36835580 |
aagtatttagattaacaatcattttaacttgttaatttcaaaactataccacagctaaactattgttttttaaaggagctaaactcatttttatagcttt |
36835679 |
T |
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| Q |
348 |
ctttgatgaaaatgtgatataaatttgca--ctctactctctaggaatcctatgcagcatatgtgcacatgttgcagccatagttggagggatccaatat |
445 |
Q |
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| T |
36835680 |
ctttgatgaaaatgtgatataaatttgcactctctactctctaggaatcctatgcagcatatgtgcacatgttgcagccgtagttggatggatccaatat |
36835779 |
T |
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| Q |
446 |
gcatttagtggtgtattagatttagattttaagagactccatttcagatgagtttaatttattttaaatataaaatgcttatacggaaattgattgcata |
545 |
Q |
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| T |
36835780 |
gcatttagtggtgtattagatttagattttaagagactccatttcagatgagtttaatttattttaaatataaaatgcttatacggaaattgatcgcata |
36835879 |
T |
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| Q |
546 |
ttt |
548 |
Q |
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| T |
36835880 |
ttt |
36835882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 36835333 - 36835399
Alignment:
| Q |
1 |
tagtaaaagcattaatgtatgtggcgcatagccctcgtgttacttaccatcatcatcaataatttta |
67 |
Q |
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| T |
36835333 |
tagtaaaagcattaatgtatgtggcgcatagccctcgtgttacttaccatcatcatcaataatttta |
36835399 |
T |
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