View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10174_low_50 (Length: 254)
Name: NF10174_low_50
Description: NF10174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10174_low_50 |
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Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 1696149 - 1696392
Alignment:
| Q |
1 |
ccaaacgagataacattccctgcattcaaatttcacaaaaatcaatcagaaacatgtatgattaatcgattaacataaaaagctaaaatcaatcgtaact |
100 |
Q |
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| T |
1696149 |
ccaaacgagataacattccctgcattcaaatttcacaaaaatcaatcagaaacatgtatgattaatcgattaacataaaaagctaaaatcaatcgtaact |
1696248 |
T |
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| Q |
101 |
gaactaaagacttctaaaatcgattatcagaaaaagttaaaattatactttatgcatgcatgcatgataatcgattatgagaaaaagttaaaataaactg |
200 |
Q |
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| T |
1696249 |
gaactaaaaacttccaaaatcgattatcagaaaaagttaaaattatactttatgcatgcatgcatgataatcgattatgataaaaagttaaaataaactg |
1696348 |
T |
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| Q |
201 |
aaatgatactgaaaagagaagaagaagtgattaacaaacctatg |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1696349 |
aaatgatactgaaaagagaagaagaagtgattaacaaacctatg |
1696392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 1685600 - 1685835
Alignment:
| Q |
1 |
ccaaacgagataacattccctgcattcaaa-tttcacaaaa--atcaatcagaaacatgtatgattaatcgattaacataaaaagctaaaatcaatcgta |
97 |
Q |
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||||||||||||||||||||| |||||||| ||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1685600 |
ccaaacgagataacattcccttcattcaaaatttcagaaaaaaatcaatcagaaacatgtatgattaatcgattaacacaaaaagctaaaatcaatcgta |
1685699 |
T |
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| Q |
98 |
actgaactaaagacttctaaaatcgattatcagaaaaagttaaaattatactttatgcatgcatgcatgataatcgattatgagaaaaagttaaaataaa |
197 |
Q |
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||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
1685700 |
actgaactaaaaacttcaaaaatcgattatcagaaaaagttaaaattatactttatgcatgcatgcatgataatcgattatgataaaaagttaaaataa- |
1685798 |
T |
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| Q |
198 |
ctgaaatgatactgaaaagagaagaagaagtgattaacaaacctatg |
244 |
Q |
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| T |
1685799 |
----------actgaaaagagaagaagaagtgattaacaaacctatg |
1685835 |
T |
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