View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10174_low_51 (Length: 254)
Name: NF10174_low_51
Description: NF10174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10174_low_51 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 15 - 254
Target Start/End: Complemental strand, 31026997 - 31026758
Alignment:
| Q |
15 |
cacagaaatccgtttgcacagaagcgcaagtttttggcaattgaagattagtttctaccacaaccatatccattatccgcgatgattcatctgattaaat |
114 |
Q |
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| T |
31026997 |
cacagaaatccgtttgcacagaagcgcaagtttttggcaattgaagattagtttctaccacaaccatatccattatccgcgatgattcatctgattaaat |
31026898 |
T |
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| Q |
115 |
agatcataagctgtagcgatttcatttcagctgcacttccaatcaactttgaaattacaacaaggtttgcattaggtggtactggtcaacaatggttgga |
214 |
Q |
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| T |
31026897 |
agatcataagctgtagcgatttcatttcagctgcacttccaatcaactttgaaattacaacaaggtttgcattaggtggtactggtcaacaatggttgga |
31026798 |
T |
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| Q |
215 |
atcaataggcaatcggatcctcaatttgtaatcagtctgc |
254 |
Q |
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| T |
31026797 |
atcaataggcaatcggatcctcaatttggaatcagtctgc |
31026758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 96 - 218
Target Start/End: Complemental strand, 31031923 - 31031798
Alignment:
| Q |
96 |
atgattcatctgattaaatagatcataagctgtagcgatttcatttcagctgcacttccaatcaactttgaaattacaacaaggtttgcattaggtggta |
195 |
Q |
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| T |
31031923 |
atgattcatctgattaaatagatcataagctgtagcaactgcatttcagctggacttccattcaactttgaaactacagcaaggtttgcatttggtggta |
31031824 |
T |
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| Q |
196 |
c---tggtcaacaatggttggaatca |
218 |
Q |
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| T |
31031823 |
ctggtggtcaacaatggttggaatca |
31031798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 31016816 - 31016757
Alignment:
| Q |
189 |
ggtggtactggtcaacaatggttggaatcaataggc-aatcggatcctcaatttgtaatc |
247 |
Q |
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| T |
31016816 |
ggtggtactagtcaacaatggttggaaacaataggcaaatcggatgctcaatttgtaatc |
31016757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 31016933 - 31016888
Alignment:
| Q |
31 |
cacagaagcgcaagtttttggcaattgaagattagtttctaccaca |
76 |
Q |
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| T |
31016933 |
cacaaaagcgcaagtttttggcaattgaagattaggtactaccaca |
31016888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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