View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10174_low_54 (Length: 251)
Name: NF10174_low_54
Description: NF10174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10174_low_54 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 43814391 - 43814633
Alignment:
| Q |
1 |
attttataccaattaactggtnnnnnnnttgtataccaattaaacaaataaaaagactatgcataagtatatgaataaattgatttgaataaagtaatta |
100 |
Q |
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| T |
43814391 |
attttataccaattaactggtaaaaaaattgtataccaattaaacaaataaaaagactatgcataagtatatgaataaattgatttgaataaagtaatta |
43814490 |
T |
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| Q |
101 |
atgagagtaataaacatgcctgccatccagcttcaatggaattgagatcctttccaaatgtgccagagaggacccatatttgagccaaactgaattcttg |
200 |
Q |
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| T |
43814491 |
atgagagtaataaacatgcctgccatccagcttcaatggaattgagatccttttcaaatgtgccagagaggacccatatttgagccaaactgaattcttg |
43814590 |
T |
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| Q |
201 |
actttccacatgtggggcccacacgtttaagtttgcctttgct |
243 |
Q |
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| T |
43814591 |
actttccacatgtggggcccacacgtttaagtttgcctttgct |
43814633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 92 - 229
Target Start/End: Original strand, 29213711 - 29213851
Alignment:
| Q |
92 |
aagtaattaatgagagtaataaacatgcctgccatccagcttcaatggaattgagatcctttccaaatgtgccagagaggacccatatttgagccaaact |
191 |
Q |
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| T |
29213711 |
aagtaattaatgaaaataatgaacatacctgccaaccagcttcaatagtattgagatcttctccaaatgaaccagagatgatccatatttgagataagct |
29213810 |
T |
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| Q |
192 |
gaattc---ttgactttccacatgtggggcccacacgttta |
229 |
Q |
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| T |
29213811 |
gaattcatatggactttccacttgtgggacccacacattta |
29213851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 197
Target Start/End: Complemental strand, 29254492 - 29254408
Alignment:
| Q |
113 |
aacatgcctgccatccagcttcaatggaattgagatcctttccaaatgtgccagagaggacccatatttgagccaaactgaattc |
197 |
Q |
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| T |
29254492 |
aacatgcctgccaaccagcttcaatggtgttcatgtcttttccaaatgtaccagagacgatccacatttgtgccaagcttaattc |
29254408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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