View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10174_low_56 (Length: 250)
Name: NF10174_low_56
Description: NF10174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10174_low_56 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 7e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 5328582 - 5328816
Alignment:
| Q |
1 |
acataagacatacaaattttataatgcaccgtattttccctatcttttttataaaccaacaatttcagttaaaggaattaaaatataaatttgaattcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
5328582 |
acataagacatacaaattttataatgcaccgtattttccctatcttttttataaaccaacaattccagttaaaggaattaaaatataaatttgaattcaa |
5328681 |
T |
|
| Q |
101 |
atcacgagttcatgagtcaaactagannnnnnnnnnnnnnggttaaaatcctcatgattcaaactctgtgaatacatcaaatagtcaaattaatttattt |
200 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
5328682 |
atcacgagttcatgagtcaaactagatttttaatttttttggttaaaatcctcatgattcaaactctgtgaatacatcaaatagtcaaataaatttattt |
5328781 |
T |
|
| Q |
201 |
ttatatctcaatataatgtaaaatttatggtttac |
235 |
Q |
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|||||||||||| |||||||||||||||||||||| |
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| T |
5328782 |
ttatatctcaatgtaatgtaaaatttatggtttac |
5328816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 5319891 - 5320015
Alignment:
| Q |
8 |
acatacaaattttataatgcaccgtattttccct------atctt-ttttataaaccaacaatttcagttaaaggaatt-aaaatataaatttgaattca |
99 |
Q |
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||||||||||||||||||||| |||||||||| | || || |||||||||| ||||||| |||||||||||||| |||||||| |||||| ||| |
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| T |
5319891 |
acatacaaattttataatgcagcgtattttcctttattttattttattttataaactaacaattccagttaaaggaattaaaaatatatgtttgaagtca |
5319990 |
T |
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| Q |
100 |
aatcacgagttcatgagtcaaacta |
124 |
Q |
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| T |
5319991 |
aatcacgagtttatgagtcaaacta |
5320015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 149; Significance: 8e-79; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 20432666 - 20432904
Alignment:
| Q |
1 |
acataagacatacaaattttataatgcaccgtattttccctatcttttttataaaccaacaatttcagttaaaggaattaaaatataaatttgaattcaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||| |
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| T |
20432666 |
acataagacatacaaattttataatgcaccatattttccctatcttttttataaaccaacaaatccagttaaaggaattaaaatataagtttgaattcaa |
20432765 |
T |
|
| Q |
101 |
atcacgagttcatgagtcaaactagannnnnnnnnnnnnnggttaaaatcctcatgattcaaactctgtgaatacatcaaatagtcaaattaatttattt |
200 |
Q |
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| T |
20432766 |
atcacgagtttatgagtcaaattata-tttttatttttttggttgaaatcctcatgattcaaactctggaaatacatcaaatagtcaaattaatttattt |
20432864 |
T |
|
| Q |
201 |
ttatatctcaatataatgtaaaatttatggtttacctttg |
240 |
Q |
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| T |
20432865 |
ttatatctcaatgtaatgtaaaatttatggtttacctttg |
20432904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 20427142 - 20427266
Alignment:
| Q |
8 |
acatacaaattttataatgcaccgtattttccct------atctt-ttttataaaccaacaatttcagttaaaggaatt-aaaatataaatttgaattca |
99 |
Q |
| |
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||||||||||||||||||||| |||||||||| | || || |||||||||| ||||||| |||||||||||||| |||||||| |||||| ||| |
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| T |
20427142 |
acatacaaattttataatgcagcgtattttcctttattttattttattttataaactaacaattccagttaaaggaattaaaaatatatgtttgaagtca |
20427241 |
T |
|
| Q |
100 |
aatcacgagttcatgagtcaaacta |
124 |
Q |
| |
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||||||||||| ||||||||||||| |
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| T |
20427242 |
aatcacgagtttatgagtcaaacta |
20427266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 230
Target Start/End: Original strand, 20427333 - 20427396
Alignment:
| Q |
167 |
tgtgaatacatcaaatagtcaaattaatttatttttatatctcaatataatgtaaaatttatgg |
230 |
Q |
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||||||||||||||| |||||||||||||| ||||||||||| | ||||||||||||||| |
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| T |
20427333 |
tgtgaatacatcaaaggttcaaattaatttatcaatatatctcaatgtgatgtaaaatttatgg |
20427396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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