View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10174_low_6 (Length: 525)
Name: NF10174_low_6
Description: NF10174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10174_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 7089055 - 7089339
Alignment:
| Q |
1 |
ggaggatgaccatctaagattgtgaacttggtgccgagaaaattagacctgttcattgcttaatgatcaagtaaacagtagaataataatgcattaacca |
100 |
Q |
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| T |
7089055 |
ggaggatgaccatctaagattgtgaacttggtgccgagaaaattagacctgttcattgcttaatgatcaagtaaacagtagaataataatgcattaacca |
7089154 |
T |
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| Q |
101 |
tgaaaaaatgtggattgattgaggacactaaccttaactttccaatgtaagtattgttagctctagagaaatcatcagtaaccaatgatattaaaaattc |
200 |
Q |
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| T |
7089155 |
tgaaaaaatgtggattgattgaggagactaaccttaactttccaatgtaagtattgttagctctagagaaatcatcagaaaccaatgatattaaaaattc |
7089254 |
T |
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| Q |
201 |
tgtgcatgttgctcttctaatcttctttgctgccaagagaagtttgctcatatcaccagaaagagctgcaaatacaataacacaa |
285 |
Q |
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| T |
7089255 |
tgtgcatgttgctcttctaatcttctttgctgccaagagaagtttgctcatatcaccagaaagagctgcaaatacaataacacaa |
7089339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 1 - 498
Target Start/End: Original strand, 7668397 - 7668888
Alignment:
| Q |
1 |
ggaggatgaccatctaagattgtgaacttggtgccgagaaaattagacctgttcatt-gcttaatgatcaagtaaacagtagaataataatgcattaacc |
99 |
Q |
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| T |
7668397 |
ggaggatgaccatccaagatcgtgaacttggtgccgagaaaattagacctgttattttgcttaatgatcaactaagcactagaataataatgcattagcc |
7668496 |
T |
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| Q |
100 |
atgaaaaaatgtggattgattgaggacactaaccttaactttccaatgtaagtattgttagctctagagaaatcatcagtaaccaatgatattaaaaatt |
199 |
Q |
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| T |
7668497 |
tt-aaaagatgtgaattgatatgggacactaaccttaactttccaatgtaagtattgttagctctagagaaatcatcagaaaccaatgatattaaaaaat |
7668595 |
T |
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| Q |
200 |
ctgtgcatgttgctcttctaatcttctttgctgccaagagaagtttgctcatatcaccagaaagagctgcaaatacaataacacaattcactaagttaag |
299 |
Q |
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| T |
7668596 |
ttgtgcatgttgctcttctaatcttctttgcagccaagagaagtttgctc--atcaccagaaagagctgcaaatacaataacacaattcacaaagat--- |
7668690 |
T |
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| Q |
300 |
agataatttagctactaacttcatagattgagaatagttaagagactatttgttacatttccatactttagggactgaataagagataaggtaacagttt |
399 |
Q |
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| || ||||| ||||||||||||||| |||||||||| | ||||||||| |||||||||| || || | |||| |||| |||| || || | ||||| |
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| T |
7668691 |
-ggtagtttagagactaacttcatagatcgagaatagtttatagactatttattacatttccgtagttcaaagactaaataggagagaatgtgatagttt |
7668789 |
T |
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| Q |
400 |
aatgattgaattgtaactttactctggaaaacagaaagatgaaaaagaatactacnnnnnnngcctaaaagaaggtaattcaatttttaacaactacat |
498 |
Q |
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| T |
7668790 |
agcgattgaattgaaagttcactctggaaaacagaaggatgaaaaagaatactacaaaaaaaacctaaaagagggtatttcaagttttaacaactacat |
7668888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 322 - 507
Target Start/End: Original strand, 7089340 - 7089526
Alignment:
| Q |
322 |
atagattgagaatagttaagagactatttgttacatttccatactttagggactgaataagagataaggtaacagtttaatgattgaattgtaactttac |
421 |
Q |
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| T |
7089340 |
atagattgagaatagttaagagactatttgttacatttccatactttagggactgaataagagataaggtaacagtttaatgattgaattgtaagtttac |
7089439 |
T |
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| Q |
422 |
tctggaaaacagaaagatgaaaaagaatactac-nnnnnnngcctaaaagaaggtaattcaatttttaacaactacatacttcattt |
507 |
Q |
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| T |
7089440 |
tctggaaaacagaaagatgaaaaagaatactacaaaaaaaagcctaaaagaaggtaattcaagttttaacaactacatacttcattt |
7089526 |
T |
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