View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10174_low_61 (Length: 249)
Name: NF10174_low_61
Description: NF10174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10174_low_61 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 90 - 237
Target Start/End: Original strand, 44534354 - 44534501
Alignment:
| Q |
90 |
aagatgttattgaactttgtcactgaaaatagtcatatattaaaggcataccacaaacacctggaccataaaaattcaatttannnnnnnnnnnnnaaat |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
44534354 |
aagatgttattgaactttgtcactgaaaatagtcatatattaaaggcataccacaaacacctggaccataaaaattcaatttatttttttctttttaaat |
44534453 |
T |
|
| Q |
190 |
catggtcccatttgaaaaagcatcattatgtatgttcatgttcatctg |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44534454 |
catggtcccatttgaaaaagcatcattatgtatgttcatgttcatctg |
44534501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University