View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10174_low_65 (Length: 246)

Name: NF10174_low_65
Description: NF10174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10174_low_65
NF10174_low_65
[»] chr2 (12 HSPs)
chr2 (1-227)||(30482817-30483043)
chr2 (1-204)||(30475214-30475417)
chr2 (21-202)||(30394069-30394250)
chr2 (1-228)||(30468085-30468312)
chr2 (21-202)||(30383940-30384121)
chr2 (4-204)||(30436346-30436546)
chr2 (1-184)||(30424092-30424275)
chr2 (1-184)||(30430125-30430308)
chr2 (21-201)||(8380056-8380236)
chr2 (6-202)||(23784237-23784433)
chr2 (6-202)||(23767646-23767842)
chr2 (89-202)||(23796898-23797011)
[»] chr5 (1 HSPs)
chr5 (21-202)||(41628322-41628503)
[»] chr8 (4 HSPs)
chr8 (22-191)||(15846073-15846242)
chr8 (22-191)||(15860262-15860431)
chr8 (22-180)||(15852912-15853070)
chr8 (22-191)||(15866649-15866818)


Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 30482817 - 30483043
Alignment:
Q  1 atgttaccaatattctttaaaagttgcaatgatatgattaggaaatgggagggaatgttatcattagatggatcatgtgaaattgatgtatggccttcca 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30482817 atgttaccaatattctttaaaagttgcaatgatatgattagcaaatgggagggaatgttatcattagatggatcatgtgaaattgatgtatggccttcca 30482916  T
Q  101 ttcaaaatttggctagtgatgttattgctcgaacagcatttggaagtagttatgaagaaggaataaaaatatttcaacttcaaaaggagcaagctgaact 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30482917 ttcaaaatttggctagtgatgttattgctcgaacagcatttggaagtagttatgaagaaggaataaaaatatttcaacttcaaaaggagcaagctgaact 30483016  T
Q  201 tacattggaaattttgatgaaagttta 227  Q
    |||||||||||||||||||||||||||    
T  30483017 tacattggaaattttgatgaaagttta 30483043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 30475214 - 30475417
Alignment:
Q  1 atgttaccaatattctttaaaagttgcaatgatatgattaggaaatgggagggaatgttatcattagatggatcatgtgaaattgatgtatggccttcca 100  Q
    ||||||||||| ||||| ||||||||  ||||| ||||||  ||||||||| ||||||| |||| |||||||||||||||| | ||||| ||||||| |     
T  30475214 atgttaccaattttcttcaaaagttgtgatgatttgattaccaaatgggagagaatgttgtcatcagatggatcatgtgaattggatgtttggcctttcc 30475313  T
Q  101 ttcaaaatttggctagtgatgttattgctcgaacagcatttggaagtagttatgaagaaggaataaaaatatttcaacttcaaaaggagcaagctgaact 200  Q
    ||||||||||||| |||||||||||| || |||||||||||||||||||||||||||| |||| || |||||||||||||||||  ||||||||||||||    
T  30475314 ttcaaaatttggcgagtgatgttatttctagaacagcatttggaagtagttatgaagagggaaaaagaatatttcaacttcaaatcgagcaagctgaact 30475413  T
Q  201 taca 204  Q
    ||||    
T  30475414 taca 30475417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 21 - 202
Target Start/End: Original strand, 30394069 - 30394250
Alignment:
Q  21 aagttgcaatgatatgattaggaaatgggagggaatgttatcattagatggatcatgtgaaattgatgtatggccttccattcaaaatttggctagtgat 120  Q
    ||||||||||||||||||||| |||||||||| |||||| || | |||||||||||||||||| || |||||||||||| | || |||||||| ||||||    
T  30394069 aagttgcaatgatatgattagcaaatgggaggaaatgttgtcttcagatggatcatgtgaaatagacgtatggccttccctgcagaatttggcaagtgat 30394168  T
Q  121 gttattgctcgaacagcatttggaagtagttatgaagaaggaataaaaatatttcaacttcaaaaggagcaagctgaactta 202  Q
    | |||| ||||||| || ||||||||||||||||||||||||| || |||||||||||||||||  ||||||||||||||||    
T  30394169 gctatttctcgaactgcgtttggaagtagttatgaagaaggaaaaagaatatttcaacttcaaagagagcaagctgaactta 30394250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 30468085 - 30468312
Alignment:
Q  1 atgttaccaatattctttaaaagttgcaatgatatgattaggaaatgggagggaatgttatcattagatggatcatgtgaaattgatgtatggccttcca 100  Q
    |||||||||||||||   ||||||||| ||||| ||||||| |||||||||  |||||| || | |||||||||||||||||| || |||||||||| |     
T  30468085 atgttaccaatattccacaaaagttgcgatgatctgattagcaaatgggagaaaatgttgtcgtcagatggatcatgtgaaatggacgtatggcctttcc 30468184  T
Q  101 ttcaaaatttggctagtgatgttattgctcgaacagcatttggaagtagttatgaagaaggaataaaaatatttcaacttcaaaaggagcaagctgaact 200  Q
    |||||||||| || |||||||||||| ||||| |||| |||||||||||||||||||| |||| || |||||||||||||||||  || |||||||||||    
T  30468185 ttcaaaattttgccagtgatgttatttctcgagcagcgtttggaagtagttatgaagagggaaaaagaatatttcaacttcaaaccgaacaagctgaact 30468284  T
Q  201 tacattggaaattttgatgaaagtttat 228  Q
    ||||    ||||| ||||||||||||||    
T  30468285 tacaactaaaattatgatgaaagtttat 30468312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 21 - 202
Target Start/End: Original strand, 30383940 - 30384121
Alignment:
Q  21 aagttgcaatgatatgattaggaaatgggagggaatgttatcattagatggatcatgtgaaattgatgtatggccttccattcaaaatttggctagtgat 120  Q
    ||||||||||||| ||||||  |||||||||  |||||| || | |||||||||||||||||| ||| ||||||||||| | ||||||||||| ||||||    
T  30383940 aagttgcaatgatttgattaacaaatgggagaaaatgttgtcttcagatggatcatgtgaaatagatatatggccttccctgcaaaatttggcaagtgat 30384039  T
Q  121 gttattgctcgaacagcatttggaagtagttatgaagaaggaataaaaatatttcaacttcaaaaggagcaagctgaactta 202  Q
    | |||| ||||||| |||||||||||||| ||||||||||||| || |||||||||||||||||  ||||||||||||||||    
T  30384040 gctatttctcgaaccgcatttggaagtagctatgaagaaggaaaaagaatatttcaacttcaaagagagcaagctgaactta 30384121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 4 - 204
Target Start/End: Original strand, 30436346 - 30436546
Alignment:
Q  4 ttaccaatattctttaaaagttgcaatgatatgattaggaaatgggagggaatgttatcattagatggatcatgtgaaattgatgtatggccttccattc 103  Q
    ||||||||||||   ||||||||| ||||| ||||||| |||||||||  |||||| || | |||||||||||||||||| || |||||||||| | |||    
T  30436346 ttaccaatattccacaaaagttgcgatgatttgattagcaaatgggagaaaatgttgtcgtcagatggatcatgtgaaatggacgtatggcctttccttc 30436445  T
Q  104 aaaatttggctagtgatgttattgctcgaacagcatttggaagtagttatgaagaaggaataaaaatatttcaacttcaaaaggagcaagctgaacttac 203  Q
    |||||||||| |||||| ||||| ||||| |||| |||||||||||||||||||| |||| || |||||||||||||||||  || ||||||||||||||    
T  30436446 aaaatttggccagtgatcttatttctcgagcagcgtttggaagtagttatgaagagggaaaaagaatatttcaacttcaaaccgaacaagctgaacttac 30436545  T
Q  204 a 204  Q
    |    
T  30436546 a 30436546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 30424092 - 30424275
Alignment:
Q  1 atgttaccaatattctttaaaagttgcaatgatatgattaggaaatgggagggaatgttatcattagatggatcatgtgaaattgatgtatggccttcca 100  Q
    ||||||||||||| | | ||||||||| ||||| ||||||| |||||||||  ||||||  | | |||||||||||||||||| || |||||||||| |     
T  30424092 atgttaccaatatacctcaaaagttgcgatgatctgattagcaaatgggagaaaatgttggcttcagatggatcatgtgaaatggacgtatggcctttcc 30424191  T
Q  101 ttcaaaatttggctagtgatgttattgctcgaacagcatttggaagtagttatgaagaaggaataaaaatatttcaacttcaaa 184  Q
    ||||||||||||| |||||||||||| ||||| | ||||||||||||||||||||||| |||| || |||||||||||||||||    
T  30424192 ttcaaaatttggcgagtgatgttatttctcgagctgcatttggaagtagttatgaagagggaaaaagaatatttcaacttcaaa 30424275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 30430125 - 30430308
Alignment:
Q  1 atgttaccaatattctttaaaagttgcaatgatatgattaggaaatgggagggaatgttatcattagatggatcatgtgaaattgatgtatggccttcca 100  Q
    ||||||||||||| | | ||||| ||| ||||| ||||||| |||||||||  ||||||  | | |||||||||||||||||| || |||||||||| |     
T  30430125 atgttaccaatatacctcaaaagatgcgatgatctgattagcaaatgggagaaaatgttggcttcagatggatcatgtgaaatggaagtatggcctttcc 30430224  T
Q  101 ttcaaaatttggctagtgatgttattgctcgaacagcatttggaagtagttatgaagaaggaataaaaatatttcaacttcaaa 184  Q
    |||||||||| || || ||||||||| ||||| | ||||||||||||||||||||||| |||| || |||||||||||||||||    
T  30430225 ttcaaaatttagcaagagatgttatttctcgagctgcatttggaagtagttatgaagagggaaaaagaatatttcaacttcaaa 30430308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 201
Target Start/End: Complemental strand, 8380236 - 8380056
Alignment:
Q  21 aagttgcaatgatatgattaggaaatgggagggaatgttatcattagatggatcatgtgaaattgatgtatggccttccattcaaaatttggctagtgat 120  Q
    |||||||| |||||||||||| |||||||||  || ||| |||| |||||||||| ||||||| ||  ||||||||||| | || |||||| | ||||||    
T  8380236 aagttgcattgatatgattagcaaatgggagtcaacgttgtcatcagatggatcaggtgaaatagacatatggccttccctacagaatttgacaagtgat 8380137  T
Q  121 gttattgctcgaacagcatttggaagtagttatgaagaaggaataaaaatatttcaacttcaaaaggagcaagctgaactt 201  Q
    |||||| ||||||  ||||||||||||||||| |||||||||| || ||||||| | |||||||  ||||||| |||||||    
T  8380136 gttatttctcgaaacgcatttggaagtagttacgaagaaggaaaaagaatatttgatcttcaaagagagcaaggtgaactt 8380056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 6 - 202
Target Start/End: Complemental strand, 23784433 - 23784237
Alignment:
Q  6 accaatattctttaaaagttgcaatgatatgattaggaaatgggagggaatgttatcattagatggatcatgtgaaattgatgtatggccttccattcaa 105  Q
    ||||| |||||| ||||| ||||||||| ||||||| || |||||   |||||| || | | |||||||||||||||| || |||||||||||| ||||     
T  23784433 accaacattcttgaaaagctgcaatgatttgattagcaattgggaaaaaatgttgtcttcaaatggatcatgtgaaatggacgtatggccttcccttcag 23784334  T
Q  106 aatttggctagtgatgttattgctcgaacagcatttggaagtagttatgaagaaggaataaaaatatttcaacttcaaaaggagcaagctgaactta 202  Q
    |  ||| | ||||||||||| |||||  |  ||||||||||||||||||||||||||| |||| |||||||||||||||  ||||||| ||||||||    
T  23784333 agcttgacaagtgatgttatcgctcgttcgtcatttggaagtagttatgaagaaggaagaaaagtatttcaacttcaaatagagcaaggtgaactta 23784237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 6 - 202
Target Start/End: Original strand, 23767646 - 23767842
Alignment:
Q  6 accaatattctttaaaagttgcaatgatatgattaggaaatgggagggaatgttatcattagatggatcatgtgaaattgatgtatggccttccattcaa 105  Q
    ||||| |||||| ||||| ||||| ||| ||||||| || ||||| | || ||| || | | ||||||| | |||||| ||  ||||||||||| ||||     
T  23767646 accaacattcttgaaaagctgcaacgatttgattagcaattgggaagaaacgttgtcttcaaatggatcctctgaaatagacatatggccttcccttcag 23767745  T
Q  106 aatttggctagtgatgttattgctcgaacagcatttggaagtagttatgaagaaggaataaaaatatttcaacttcaaaaggagcaagctgaactta 202  Q
    |  ||| | ||||||||||| |||||  |  ||||||||||||||||||||||||||| |||| |||||||||||||||  ||||||| ||||||||    
T  23767746 agcttgacaagtgatgttatcgctcgttcgtcatttggaagtagttatgaagaaggaagaaaagtatttcaacttcaaatagagcaaggtgaactta 23767842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 89 - 202
Target Start/End: Original strand, 23796898 - 23797011
Alignment:
Q  89 tatggccttccattcaaaatttggctagtgatgttattgctcgaacagcatttggaagtagttatgaagaaggaataaaaatatttcaacttcaaaagga 188  Q
    ||||||||||| |||| |  ||| | ||||||||||| |||||  |  ||||||||||||||||||||||||||| |||| |||||||||||||||  ||    
T  23796898 tatggccttcccttcagagcttgacaagtgatgttatcgctcgttcgtcatttggaagtagttatgaagaaggaagaaaagtatttcaacttcaaataga 23796997  T
Q  189 gcaagctgaactta 202  Q
    ||||| ||||||||    
T  23796998 gcaaggtgaactta 23797011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 21 - 202
Target Start/End: Complemental strand, 41628503 - 41628322
Alignment:
Q  21 aagttgcaatgatatgattaggaaatgggagggaatgttatcattagatggatcatgtgaaattgatgtatggccttccattcaaaatttggctagtgat 120  Q
    ||||||||| ||| | ||||| |||||||||| |||||| ||   |||||||||||||||||| ||| ||||||||||| |||| |||||||| ||||||    
T  41628503 aagttgcaacgatttaattagaaaatgggaggaaatgttgtctccagatggatcatgtgaaatagatatatggccttcccttcagaatttggcgagtgat 41628404  T
Q  121 gttattgctcgaacagcatttggaagtagttatgaagaaggaataaaaatatttcaacttcaaaaggagcaagctgaactta 202  Q
    |||||| |||||||| |||| |||||||||||||||||||||| || |||||||||||||||||  ||||||||||||||||    
T  41628403 gttatttctcgaacaacattcggaagtagttatgaagaaggaagaagaatatttcaacttcaaattgagcaagctgaactta 41628322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 191
Target Start/End: Complemental strand, 15846242 - 15846073
Alignment:
Q  22 agttgcaatgatatgattaggaaatgggagggaatgttatcattagatggatcatgtgaaattgatgtatggccttccattcaaaatttggctagtgatg 121  Q
    ||||||||||| ||||| || |||||| ||||| | || |||| ||||||| |||||||  ||||||| ||||||| | |||| |||||| |  ||||||    
T  15846242 agttgcaatgaaatgataagcaaatggaagggattattgtcatcagatggaacatgtgagcttgatgtttggcctttccttcagaatttgacctgtgatg 15846143  T
Q  122 ttattgctcgaacagcatttggaagtagttatgaagaaggaataaaaatatttcaacttcaaaaggagca 191  Q
    | ||| || |||||||||||||||| || |||| |||||||  ||||||||||||||||| |||| ||||    
T  15846142 taatttctagaacagcatttggaagcagctatgcagaaggagcaaaaatatttcaacttctaaagaagca 15846073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 191
Target Start/End: Complemental strand, 15860431 - 15860262
Alignment:
Q  22 agttgcaatgatatgattaggaaatgggagggaatgttatcattagatggatcatgtgaaattgatgtatggccttccattcaaaatttggctagtgatg 121  Q
    ||||||||||| ||||| || |||||| ||||| | || |||| ||||||| ||||||| |||||||| ||||||||| |||| |||||  |  ||||||    
T  15860431 agttgcaatgaaatgataagcaaatggaagggattattgtcatcagatggaacatgtgagattgatgtttggccttcccttcagaattttacctgtgatg 15860332  T
Q  122 ttattgctcgaacagcatttggaagtagttatgaagaaggaataaaaatatttcaacttcaaaaggagca 191  Q
    | ||| |||| |||||||||||||| || || | |||||||| |||| |||||||||||| |||| ||||    
T  15860331 taatttctcggacagcatttggaagcagctacgcagaaggaacaaaactatttcaacttctaaagaagca 15860262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 180
Target Start/End: Complemental strand, 15853070 - 15852912
Alignment:
Q  22 agttgcaatgatatgattaggaaatgggagggaatgttatcattagatggatcatgtgaaattgatgtatggccttccattcaaaatttggctagtgatg 121  Q
    ||||||||||| ||||| || |||||| | ||  | || |||| ||||||| ||||||| |||||||| ||||||| | |||| |||||| |  ||||||    
T  15853070 agttgcaatgaaatgataagcaaatggaatggtttattgtcatcagatggaacatgtgagattgatgtttggcctttccttcagaatttgacgtgtgatg 15852971  T
Q  122 ttattgctcgaacagcatttggaagtagttatgaagaaggaataaaaatatttcaactt 180  Q
    | ||| |||| |||||||||||||| || || | |||||||| |||| |||||||||||    
T  15852970 taatttctcggacagcatttggaagcagctacgcagaaggaacaaaactatttcaactt 15852912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 191
Target Start/End: Complemental strand, 15866818 - 15866649
Alignment:
Q  22 agttgcaatgatatgattaggaaatgggagggaatgttatcattagatggatcatgtgaaattgatgtatggccttccattcaaaatttggctagtgatg 121  Q
    ||||||||||| |||||||| |||||| ||| | | || |||| ||||||| |||||||  ||||||| ||||||| | |||| |||||  |  ||||||    
T  15866818 agttgcaatgaaatgattagtaaatggaaggaactattgtcatcagatggaacatgtgaggttgatgtttggcctttccttcagaattttacctgtgatg 15866719  T
Q  122 ttattgctcgaacagcatttggaagtagttatgaagaaggaataaaaatatttcaacttcaaaaggagca 191  Q
    | ||| |||| || ||||||||||| || || | |||||||  |||| |||||||||||| |||| ||||    
T  15866718 taatttctcggacggcatttggaagcagctacgcagaaggagaaaaactatttcaacttctaaagaagca 15866649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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