View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10174_low_7 (Length: 493)
Name: NF10174_low_7
Description: NF10174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10174_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Complemental strand, 39084641 - 39084202
Alignment:
| Q |
1 |
ttgagatgcataaatcaatgctctaatccttaagattccgaatttactaaagtaaatgaaaacaaagaacaaactgataaaaggatttcacagtttcatt |
100 |
Q |
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| T |
39084641 |
ttgagatgcataaatcaatgctctaatccttaagattccgaatttactaaagtaaatgaaaacaaagaacaaactgaaaaaaggatttcacagtttcatt |
39084542 |
T |
|
| Q |
101 |
tgagcagcattacagaatttggtatatgcagaaaaggatctaagttacacctaagatacacacatgcaaatgcaattaaacaagaaccatactcattaac |
200 |
Q |
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| T |
39084541 |
tgagcagcattacagaatttggtatatgcagaaaaggatctaagttacacctaagatacacacatgcaaatgcaattaaacaagaaccatactcattaac |
39084442 |
T |
|
| Q |
201 |
ataatttctacacataataatacccaacattaatccacaatatttatttaactactaaccaaaactaaaataactataccactaaaaactcttgaggaac |
300 |
Q |
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| T |
39084441 |
ataatttctacacataataatacccaacattaatccacaatatttatttaactactaaccaaaactaaaataactataccactaaaaactcttgaggaac |
39084342 |
T |
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| Q |
301 |
aaccaatgagtatgttttttctcaatattcttctccttaatagtatccaagctaggcttccaccctttccctgaaatctgcctattcaaataatctggtc |
400 |
Q |
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| T |
39084341 |
aaccaatgagtatgttttttctcaatattcttctccttaatagtatccaagctaggcttccaccctttccctgaaatctgcctattcaaataatctggtc |
39084242 |
T |
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| Q |
401 |
tcccttccattatttccggcaaattctccgaaaaatcatg |
440 |
Q |
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| T |
39084241 |
tcccttccattatttccggcaaattctccgaaaaatcatg |
39084202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 328 - 391
Target Start/End: Original strand, 44729752 - 44729815
Alignment:
| Q |
328 |
ttcttctccttaatagtatccaagctaggcttccaccctttccctgaaatctgcctattcaaat |
391 |
Q |
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| T |
44729752 |
ttcttttccttaattgtatccaagctaggcttccaccctttccctgataattgcctactcaaat |
44729815 |
T |
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