View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10174_low_70 (Length: 243)

Name: NF10174_low_70
Description: NF10174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10174_low_70
NF10174_low_70
[»] chr6 (11 HSPs)
chr6 (101-225)||(32562215-32562339)
chr6 (101-177)||(13867503-13867579)
chr6 (101-190)||(34574393-34574482)
chr6 (101-190)||(32560123-32560210)
chr6 (103-161)||(5089965-5090023)
chr6 (128-178)||(24159456-24159506)
chr6 (141-190)||(15508560-15508608)
chr6 (192-225)||(15508514-15508547)
chr6 (184-225)||(32986777-32986818)
chr6 (192-225)||(34574496-34574529)
chr6 (192-225)||(34804060-34804093)
[»] chr1 (8 HSPs)
chr1 (101-225)||(4639897-4640021)
chr1 (101-225)||(42159777-42159907)
chr1 (101-225)||(44299742-44299877)
chr1 (102-190)||(11756668-11756755)
chr1 (101-225)||(23259249-23259381)
chr1 (131-225)||(44109764-44109865)
chr1 (101-190)||(4638608-4638694)
chr1 (186-225)||(38624233-38624272)
[»] chr8 (11 HSPs)
chr8 (101-190)||(29725985-29726074)
chr8 (101-225)||(43129756-43129885)
chr8 (101-190)||(31642547-31642636)
chr8 (103-225)||(19142723-19142856)
chr8 (109-225)||(15825444-15825571)
chr8 (101-225)||(38364272-38364406)
chr8 (101-190)||(35019698-35019789)
chr8 (101-188)||(41669859-41669948)
chr8 (101-190)||(34355644-34355733)
chr8 (102-180)||(40209716-40209794)
chr8 (192-225)||(29725939-29725972)
[»] chr4 (20 HSPs)
chr4 (101-190)||(49646237-49646326)
chr4 (101-225)||(50792213-50792348)
chr4 (101-190)||(49648639-49648728)
chr4 (101-180)||(26919975-26920054)
chr4 (102-190)||(50791043-50791131)
chr4 (102-190)||(19870770-19870858)
chr4 (101-225)||(43939921-43940055)
chr4 (101-180)||(7112624-7112703)
chr4 (101-225)||(31624205-31624331)
chr4 (101-190)||(19870170-19870258)
chr4 (102-190)||(10658683-10658771)
chr4 (102-190)||(10872828-10872916)
chr4 (101-190)||(10656379-10656461)
chr4 (101-190)||(10870524-10870606)
chr4 (102-190)||(51941963-51942050)
chr4 (101-140)||(14269693-14269732)
chr4 (192-225)||(10658785-10658818)
chr4 (192-225)||(10872930-10872963)
chr4 (192-225)||(19870124-19870157)
chr4 (192-225)||(51941917-51941950)
[»] chr3 (20 HSPs)
chr3 (101-190)||(43359100-43359189)
chr3 (103-190)||(41889218-41889305)
chr3 (101-190)||(41889022-41889112)
chr3 (102-190)||(50938035-50938123)
chr3 (101-180)||(39130290-39130369)
chr3 (101-190)||(48072187-48072276)
chr3 (101-190)||(2228968-2229057)
chr3 (106-190)||(7041945-7042029)
chr3 (101-222)||(43860895-43861024)
chr3 (101-180)||(42877451-42877530)
chr3 (105-190)||(22978290-22978375)
chr3 (101-190)||(50935899-50935987)
chr3 (104-222)||(42167136-42167262)
chr3 (186-225)||(30742931-30742970)
chr3 (192-225)||(7041897-7041930)
chr3 (192-225)||(22978244-22978277)
chr3 (192-225)||(41888976-41889009)
chr3 (192-225)||(43359203-43359236)
chr3 (192-225)||(48072141-48072174)
chr3 (192-225)||(50935853-50935886)
[»] chr2 (10 HSPs)
chr2 (101-225)||(24520035-24520170)
chr2 (102-190)||(6319739-6319827)
chr2 (102-190)||(6321941-6322029)
chr2 (101-190)||(18246887-18246976)
chr2 (101-190)||(33179172-33179261)
chr2 (101-225)||(36602534-36602665)
chr2 (101-190)||(14452512-14452601)
chr2 (192-225)||(6319693-6319726)
chr2 (192-225)||(14452466-14452499)
chr2 (192-225)||(18246841-18246874)
[»] scaffold0014 (1 HSPs)
scaffold0014 (101-190)||(71362-71451)
[»] chr7 (15 HSPs)
chr7 (101-225)||(37707890-37708025)
chr7 (101-190)||(33979833-33979922)
chr7 (102-225)||(33982116-33982249)
chr7 (101-180)||(585696-585775)
chr7 (101-225)||(1601114-1601246)
chr7 (101-190)||(595910-595999)
chr7 (101-190)||(47253056-47253145)
chr7 (101-190)||(42833515-42833606)
chr7 (104-180)||(43544700-43544776)
chr7 (101-190)||(38224839-38224928)
chr7 (101-190)||(42831406-42831496)
chr7 (118-190)||(41406414-41406486)
chr7 (192-225)||(33979781-33979814)
chr7 (192-225)||(42831360-42831393)
chr7 (192-225)||(47253010-47253043)
[»] chr5 (8 HSPs)
chr5 (101-225)||(5101809-5101944)
chr5 (101-180)||(3034242-3034321)
chr5 (101-225)||(37253166-37253298)
chr5 (101-180)||(8524073-8524152)
chr5 (104-163)||(15526643-15526702)
chr5 (101-140)||(15524566-15524605)
chr5 (178-225)||(6789501-6789548)
chr5 (186-225)||(15527023-15527062)
[»] scaffold0009 (1 HSPs)
scaffold0009 (149-190)||(94251-94292)


Alignment Details
Target: chr6 (Bit Score: 113; Significance: 2e-57; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 101 - 225
Target Start/End: Original strand, 32562215 - 32562339
Alignment:
Q  101 caaaggagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacatgttgttttattaagttaaattaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32562215 caaaggagaaaacgtggcagttgttttattaaaaaataatctataaacttggccgttattttttaagccatgaacatgttgttttattaagttaaattaa 32562314  T
Q  201 tagggttaaaattagaagaaaatat 225  Q
    ||||||||||||| ||| |||||||    
T  32562315 tagggttaaaattggaataaaatat 32562339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 101 - 177
Target Start/End: Complemental strand, 13867579 - 13867503
Alignment:
Q  101 caaaggagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacat 177  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  13867579 caaaggagaaaacgtggcagttgttttattaaaaaataagctatgaacttggtcgttattttttaagccatgaacat 13867503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 101 - 190
Target Start/End: Original strand, 34574393 - 34574482
Alignment:
Q  101 caaaggagaaaacgtggcagttgttttatt-aaaaaataatctatgaacttggccgttattttttaagccatgaacatgttgttttattaa 190  Q
    |||||||||||| ||||||||||||||||| |||||| || |||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  34574393 caaaggagaaaatgtggcagttgttttattaaaaaaaaaaactatgaacttggccgtta-tttttaagccataaacatgttgttttattaa 34574482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 101 - 190
Target Start/End: Complemental strand, 32560210 - 32560123
Alignment:
Q  101 caaaggagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacatgttgttttattaa 190  Q
    ||||||||||||||||  ||||||||||||||||||||| ||||||| ||||||||   |||||||| ||||||||||||||||||||||    
T  32560210 caaaggagaaaacgtgagagttgttttattaaaaaataagctatgaatttggccgt--atttttaagtcatgaacatgttgttttattaa 32560123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 103 - 161
Target Start/End: Original strand, 5089965 - 5090023
Alignment:
Q  103 aaggagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattt 161  Q
    |||||||||||||| || ||||||| ||||||||||| ||||||||||||| |||||||    
T  5089965 aaggagaaaacgtgacaattgtttttttaaaaaataagctatgaacttggctgttattt 5090023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 178
Target Start/End: Complemental strand, 24159506 - 24159456
Alignment:
Q  128 attaaaaaataatctatgaacttggccgttattttttaagccatgaacatg 178  Q
    ||||||||||||  |||||||||||| ||||||||||||| ||||||||||    
T  24159506 attaaaaaataagttatgaacttggctgttattttttaagtcatgaacatg 24159456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 190
Target Start/End: Complemental strand, 15508608 - 15508560
Alignment:
Q  141 ctatgaacttggccgttattttttaagccatgaacatgttgttttattaa 190  Q
    |||||||||| || ||||||||| ||||||||||||||||||||||||||    
T  15508608 ctatgaacttcgcggttattttt-aagccatgaacatgttgttttattaa 15508560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 225
Target Start/End: Complemental strand, 15508547 - 15508514
Alignment:
Q  192 ttaaattaatagggttaaaattagaagaaaatat 225  Q
    |||||||||||||||||||||| |||||||||||    
T  15508547 ttaaattaatagggttaaaattggaagaaaatat 15508514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 32986777 - 32986818
Alignment:
Q  184 ttattaagttaaattaatagggttaaaattagaagaaaatat 225  Q
    ||||||| ||||||||||||||||||| || |||||||||||    
T  32986777 ttattaatttaaattaatagggttaaagttggaagaaaatat 32986818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 225
Target Start/End: Original strand, 34574496 - 34574529
Alignment:
Q  192 ttaaattaatagggttaaaattagaagaaaatat 225  Q
    |||||||||||||||||||||| |||||||||||    
T  34574496 ttaaattaatagggttaaaattggaagaaaatat 34574529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 225
Target Start/End: Complemental strand, 34804093 - 34804060
Alignment:
Q  192 ttaaattaatagggttaaaattagaagaaaatat 225  Q
    |||||||||||||||||||||| |||||||||||    
T  34804093 ttaaattaatagggttaaaattggaagaaaatat 34804060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 109; Significance: 6e-55; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 101 - 225
Target Start/End: Original strand, 4639897 - 4640021
Alignment:
Q  101 caaaggagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacatgttgttttattaagttaaattaa 200  Q
    |||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4639897 caaaggagaaaatgtgacaattgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacatgttgttttattaagttaaattaa 4639996  T
Q  201 tagggttaaaattagaagaaaatat 225  Q
    ||||||||||||| |||||||||||    
T  4639997 tagggttaaaattggaagaaaatat 4640021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 101 - 225
Target Start/End: Complemental strand, 42159907 - 42159777
Alignment:
Q  101 caaaggagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacatgttgttttatta------agtta 194  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||      | |||    
T  42159907 caaaggagaaaacgtggcagttgttttattaaaaaataagctatgaacttggccgttattttttaagccatgaacatgttgttttattaaaaaataatta 42159808  T
Q  195 aattaatagggttaaaattagaagaaaatat 225  Q
    ||||||||||||||||||| |||||||||||    
T  42159807 aattaatagggttaaaattggaagaaaatat 42159777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 101 - 225
Target Start/End: Original strand, 44299742 - 44299877
Alignment:
Q  101 caaaggagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacatgttgttttattaag--------- 191  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||              
T  44299742 caaaggagaaaacgtggcagttgttttattaaaaaataagctatgaactttgccgttattttttaagccatgaacattttgttttattaaaaaataatta 44299841  T
Q  192 --ttaaattaatagggttaaaattagaagaaaatat 225  Q
      |||||||||||||||||||||| |||||||||||    
T  44299842 tattaaattaatagggttaaaattggaagaaaatat 44299877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 102 - 190
Target Start/End: Original strand, 11756668 - 11756755
Alignment:
Q  102 aaaggagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacatgttgttttattaa 190  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11756668 aaaggagaaaacgtgacagttgttttattaaaaaataagctatgaacttggccgtta-tttttaagccatgaacatgttgttttattaa 11756755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 101 - 225
Target Start/End: Complemental strand, 23259381 - 23259249
Alignment:
Q  101 caaaggagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacatgttgtttt--------attaagt 192  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| | ||        ||||| |    
T  23259381 caaaggagaaaaagtggcagttgttttattaaaaaataagctatgaacttgaccgttattttttaagccatgaacatgttatattaaaaaataattaaat 23259282  T
Q  193 taaattaatagggttaaaattagaagaaaatat 225  Q
    |||||||||||||||||||||  ||||||||||    
T  23259281 taaattaatagggttaaaattgaaagaaaatat 23259249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 131 - 225
Target Start/End: Original strand, 44109764 - 44109865
Alignment:
Q  131 aaaaaataatctatgaacttggccgttattttttaagccatgaacatgttgttttatta-------agttaaattaatagggttaaaattagaagaaaat 223  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||       | |||||||||||||||||||||| ||| |||||    
T  44109764 aaaaaataagctatgaacttggccgttattttttaagccatgaacatgatgttttattaaaaaaataattaaattaatagggttaaaattggaataaaat 44109863  T
Q  224 at 225  Q
    ||    
T  44109864 at 44109865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 101 - 190
Target Start/End: Complemental strand, 4638694 - 4638608
Alignment:
Q  101 caaaggagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacatgttgttttattaa 190  Q
    ||||||||||||||||| ||||||||||||||||| ||| |||| |||||||||||   |||||||||||||||||||||||||||||||    
T  4638694 caaaggagaaaacgtgggagttgttttattaaaaa-taagctataaacttggccgta--tttttaagccatgaacatgttgttttattaa 4638608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 225
Target Start/End: Complemental strand, 38624272 - 38624233
Alignment:
Q  186 attaagttaaattaatagggttaaaattagaagaaaatat 225  Q
    ||||| ||||||||||||||||||| ||||||||||||||    
T  38624272 attaatttaaattaatagggttaaagttagaagaaaatat 38624233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 101 - 190
Target Start/End: Complemental strand, 29726074 - 29725985
Alignment:
Q  101 caaaggagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacatgttgttttattaa 190  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29726074 caaaggagaaaacgtggcagttgttttattaaaaaataagctatgaacttggccgttattttttaagccatgaacatgttgttttattaa 29725985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 101 - 225
Target Start/End: Complemental strand, 43129885 - 43129756
Alignment:
Q  101 caaaggagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacatgttgttttatta------agtta 194  Q
    ||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||      | |||    
T  43129885 caaaggagaaaacatgacagttgttttattaaaaaataagctatgaacttggccgttat-ttttaagccatgaacatgttgttttattaaaaaataatta 43129787  T
Q  195 aattaatagggttaaaattagaagaaaatat 225  Q
    ||||||||||||||||||| |||||||||||    
T  43129786 aattaatagggttaaaattggaagaaaatat 43129756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 101 - 190
Target Start/End: Original strand, 31642547 - 31642636
Alignment:
Q  101 caaaggagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacatgttgttttattaa 190  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  31642547 caaaggagaaaacgtgacagttgttttattaaaaaataagctatgaacttggctgttattttttaagccatgaacatgttgttttattaa 31642636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 103 - 225
Target Start/End: Original strand, 19142723 - 19142856
Alignment:
Q  103 aaggagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacatgttgttttattaag----------- 191  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||                
T  19142723 aaggtgaaaacgtggcagttgttttattaaaaaataagctatgaacttggccgttattttttaagccatgagcaagttgttttattaaaaaataattaaa 19142822  T
Q  192 ttaaattaatagggttaaaattagaagaaaatat 225  Q
    |||||||||||||||||||||| |||||||||||    
T  19142823 ttaaattaatagggttaaaattggaagaaaatat 19142856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 109 - 225
Target Start/End: Original strand, 15825444 - 15825571
Alignment:
Q  109 aaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacatgttgtttt-----------attaagttaaat 197  Q
    |||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||           ||||| ||||||    
T  15825444 aaaatgtggcacttgttttattaaaaaataagctatgaacttggccgttattttttaagtcatgaacatgttgttttatgaaaaaataattaaattaaat 15825543  T
Q  198 taatagggttaaaattagaagaaaatat 225  Q
    |||||||||||||||| |||||||||||    
T  15825544 taatagggttaaaattggaagaaaatat 15825571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 101 - 225
Target Start/End: Original strand, 38364272 - 38364406
Alignment:
Q  101 caaaggagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacatgttgttttattaag--------- 191  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||| |||| ||||||||||||              
T  38364272 caaaggagaaaacatggcagttgttttattaaaaaataagctatgaacttggtcgttattttt-aagccatggacatattgttttattaaaaaataatta 38364370  T
Q  192 --ttaaattaatagggttaaaattagaagaaaatat 225  Q
      |||||||||||||||||||||| |||||||||||    
T  38364371 aattaaattaatagggttaaaattggaagaaaatat 38364406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 101 - 190
Target Start/End: Complemental strand, 35019789 - 35019698
Alignment:
Q  101 caaaggagaaaacgtggcagttgttttattaa---aaaataatctatgaacttggccgttattttttaagccatgaacatgttgttttattaa 190  Q
    |||||||||||||||| |||||||||||||||   ||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  35019789 caaaggagaaaacgtgacagttgttttattaaaaaaaaataagctatgaacttggccgtta-tttttaagccaagaacatgttgttttattaa 35019698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 101 - 188
Target Start/End: Complemental strand, 41669948 - 41669859
Alignment:
Q  101 caaaggagaaaacgtggcagttgttttattaaaaaataatc--tatgaacttggccgttattttttaagccatgaacatgttgttttatt 188  Q
    |||||||||||||||| |||||||| |||||||||| ||    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  41669948 caaaggagaaaacgtgacagttgttatattaaaaaaaaaaagttatgaacttgaccgttattttttaagccatgaacatgttgttttatt 41669859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 101 - 190
Target Start/End: Original strand, 34355644 - 34355733
Alignment:
Q  101 caaaggagaaaacgtggcagttgtttt-attaaaaaataatctatgaacttggccgttattttttaagccatgaacatgttgttttattaa 190  Q
    |||| |||||||||||| ||||||||| |||||||||||| ||||||||||| || ||||||||||| |||| ||||||||||||||||||    
T  34355644 caaaagagaaaacgtggaagttgtttttattaaaaaataagctatgaacttgacc-ttattttttaacccataaacatgttgttttattaa 34355733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 180
Target Start/End: Complemental strand, 40209794 - 40209716
Alignment:
Q  102 aaaggagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacatgtt 180  Q
    |||||| |||||  |||||||||||||||||| | ||| | |||||| |||| ||| |||||||||| | |||||||||    
T  40209794 aaaggaaaaaacacggcagttgttttattaaagactaagccatgaacgtggcagttgttttttaagctacgaacatgtt 40209716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 225
Target Start/End: Complemental strand, 29725972 - 29725939
Alignment:
Q  192 ttaaattaatagggttaaaattagaagaaaatat 225  Q
    |||||||||||||||||||||| |||||||||||    
T  29725972 ttaaattaatagggttaaaattggaagaaaatat 29725939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 101 - 190
Target Start/End: Complemental strand, 49646326 - 49646237
Alignment:
Q  101 caaaggagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacatgttgttttattaa 190  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49646326 caaaggagaaaacgtggcagttgttttattaaaaaataagctatgaacttggccgttattttttaagccatgaacatgttgttttattaa 49646237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 101 - 225
Target Start/End: Original strand, 50792213 - 50792348
Alignment:
Q  101 caaaggagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacatgttgttttattaag--------- 191  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||              
T  50792213 caaaggagaaaacgtggcagttgttttattaaaaaataagctatgaacttggccattattttttaagccatgaacatgttgttttattaaaaaataatta 50792312  T
Q  192 --ttaaattaatagggttaaaattagaagaaaatat 225  Q
      |||||||||||||||||||||| |||||||||||    
T  50792313 aattaaattaatagggttaaaattggaagaaaatat 50792348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 101 - 190
Target Start/End: Original strand, 49648639 - 49648728
Alignment:
Q  101 caaaggagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacatgttgttttattaa 190  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  49648639 caaaggagaaaacgtgacagttgttttattaaaaaataagctatgaacttgaccgttattttttaagccatgaacatgttgttttattaa 49648728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 101 - 180
Target Start/End: Original strand, 26919975 - 26920054
Alignment:
Q  101 caaaggagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacatgtt 180  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26919975 caaaggagaaaacgtggcagttgttttattaaaaaataagctatgaacttggccgttattttttaagccatgaacatgtt 26920054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 102 - 190
Target Start/End: Complemental strand, 50791131 - 50791043
Alignment:
Q  102 aaaggagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacatgttgttttattaa 190  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  50791131 aaaggagaaaacgtgacagttgttttattaaaaaataagctatgaacttggccgttattttttaaatcatgaacatgttgttttattaa 50791043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 102 - 190
Target Start/End: Original strand, 19870770 - 19870858
Alignment:
Q  102 aaaggagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacatgttgttttattaa 190  Q
    |||||||||||| ||||| ||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  19870770 aaaggagaaaacatggcacttgttttattaaaaaataagctatgaacttgtccgttattttttaagtcatgaacatgttgttttattaa 19870858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 101 - 225
Target Start/End: Original strand, 43939921 - 43940055
Alignment:
Q  101 caaaggagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacatgttgttttattaag--------- 191  Q
    ||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||              
T  43939921 caaaggagaaa-cgtggcagttattttattaaaaaataagctatgaacttggccgttaatttttaagccatgaacgtgttgttttattaaaaaataattg 43940019  T
Q  192 --ttaaattaatagggttaaaattagaagaaaatat 225  Q
      |||||||||||||||||||||| |||||||||||    
T  43940020 aattaaattaatagggttaaaattggaagaaaatat 43940055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 101 - 180
Target Start/End: Original strand, 7112624 - 7112703
Alignment:
Q  101 caaaggagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacatgtt 180  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||    
T  7112624 caaaggagaaaacgtggcagtttttttattaaaaaataagctatgaacttgaccgttattttttaagccctgaacatgtt 7112703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 101 - 225
Target Start/End: Original strand, 31624205 - 31624331
Alignment:
Q  101 caaaggagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacatgt--tgttttattaagttaaatt 198  Q
    |||||||||||| |||||||||| ||||||||||| ||| ||||||| ||||||||||||||||||||||||||||| |      | ||||| |||||||    
T  31624205 caaaggagaaaatgtggcagttgctttattaaaaattaagctatgaatttggccgttattttttaagccatgaacatttaaaaaataattaaattaaatt 31624304  T
Q  199 aatagggttaaaattagaagaaaatat 225  Q
    ||||||||||||||| |||||||||||    
T  31624305 aatagggttaaaattggaagaaaatat 31624331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 101 - 190
Target Start/End: Complemental strand, 19870258 - 19870170
Alignment:
Q  101 caaaggagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacatgttgttttattaa 190  Q
    ||||||||||||| ||| ||||| ||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||| |||||||||    
T  19870258 caaaggagaaaacatggtagttggtttattaaaaaataagctatgaacttggccgttat-ttttaagccatggacatgttcttttattaa 19870170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 102 - 190
Target Start/End: Original strand, 10658683 - 10658771
Alignment:
Q  102 aaaggagaaaacgtggcagttgttttatt-aaaaaataatctatgaacttggccgttattttttaagccatgaacatgttgttttattaa 190  Q
    |||||||||||| |||||||||||||||| ||||||||| |||||||||| | ||||| ||||||||||||| |||||||||||||||||    
T  10658683 aaaggagaaaacttggcagttgttttattaaaaaaataagctatgaacttagtcgtta-tttttaagccatggacatgttgttttattaa 10658771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 102 - 190
Target Start/End: Original strand, 10872828 - 10872916
Alignment:
Q  102 aaaggagaaaacgtggcagttgttttatt-aaaaaataatctatgaacttggccgttattttttaagccatgaacatgttgttttattaa 190  Q
    |||||||||||| |||||||||||||||| ||||||||| |||||||||| | ||||| ||||||||||||| |||||||||||||||||    
T  10872828 aaaggagaaaacttggcagttgttttattaaaaaaataagctatgaacttagtcgtta-tttttaagccatggacatgttgttttattaa 10872916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 101 - 190
Target Start/End: Complemental strand, 10656461 - 10656379
Alignment:
Q  101 caaaggagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacatgttgttttattaa 190  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||       |||||| |||||||||||||||||||||    
T  10656461 caaaggagaaaacgtggcacttgttttattaaaaaataagctatgaacttggccg-------ttaagctatgaacatgttgttttattaa 10656379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 101 - 190
Target Start/End: Complemental strand, 10870606 - 10870524
Alignment:
Q  101 caaaggagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacatgttgttttattaa 190  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||       |||||| |||||||||||||||||||||    
T  10870606 caaaggagaaaacgtggcacttgttttattaaaaaataagctatgaacttggccg-------ttaagctatgaacatgttgttttattaa 10870524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 102 - 190
Target Start/End: Complemental strand, 51942050 - 51941963
Alignment:
Q  102 aaaggagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacatgttgttttattaa 190  Q
    ||||||||||| ||| ||||| | |||  |||||| || ||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  51942050 aaaggagaaaatgtgacagttttattaaaaaaaaaaaa-ctatgaacttgacagttattttttaagccatgaacatgttgttttattaa 51941963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 140
Target Start/End: Original strand, 14269693 - 14269732
Alignment:
Q  101 caaaggagaaaacgtggcagttgttttattaaaaaataat 140  Q
    ||||||||| |||||||||||||||| |||||||||||||    
T  14269693 caaaggagacaacgtggcagttgtttcattaaaaaataat 14269732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 225
Target Start/End: Original strand, 10658785 - 10658818
Alignment:
Q  192 ttaaattaatagggttaaaattagaagaaaatat 225  Q
    |||||||||||||||||||||| |||||||||||    
T  10658785 ttaaattaatagggttaaaattggaagaaaatat 10658818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 225
Target Start/End: Original strand, 10872930 - 10872963
Alignment:
Q  192 ttaaattaatagggttaaaattagaagaaaatat 225  Q
    |||||||||||||||||||||| |||||||||||    
T  10872930 ttaaattaatagggttaaaattggaagaaaatat 10872963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 225
Target Start/End: Complemental strand, 19870157 - 19870124
Alignment:
Q  192 ttaaattaatagggttaaaattagaagaaaatat 225  Q
    |||||||||||||||||||||| |||||||||||    
T  19870157 ttaaattaatagggttaaaattggaagaaaatat 19870124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 225
Target Start/End: Complemental strand, 51941950 - 51941917
Alignment:
Q  192 ttaaattaatagggttaaaattagaagaaaatat 225  Q
    |||||||||||||||||||||| |||||||||||    
T  51941950 ttaaattaatagggttaaaattggaagaaaatat 51941917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 101 - 190
Target Start/End: Original strand, 43359100 - 43359189
Alignment:
Q  101 caaaggagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacatgttgttttattaa 190  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43359100 caaaggagaaaacgtggcagttgttttattaaaaaataagctatgaacttggccgttattttttaagccatgaacatgttgttttattaa 43359189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 103 - 190
Target Start/End: Original strand, 41889218 - 41889305
Alignment:
Q  103 aaggagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacatgttgttttattaa 190  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  41889218 aaggagaaaacgtggcagttgttttattaaaaaataagctatgaacttgaccgttattttttaagccatgaacatgttgttttattaa 41889305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 101 - 190
Target Start/End: Complemental strand, 41889112 - 41889022
Alignment:
Q  101 caaaggagaaaacgtggcagttgttttattaaaaaa-taatctatgaacttggccgttattttttaagccatgaacatgttgttttattaa 190  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41889112 caaaggagaaaacgtggcagttgttttattaaaaaaataagctatgaacttggccgttattttttaagccatgaacatgttgttttattaa 41889022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 102 - 190
Target Start/End: Original strand, 50938035 - 50938123
Alignment:
Q  102 aaaggagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacatgttgttttattaa 190  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  50938035 aaaggagaaaacgtggcacttgttttattaaaaaataagctatgaacttagccgttattttttaagccatgaacatgttgttttattaa 50938123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 101 - 180
Target Start/End: Complemental strand, 39130369 - 39130290
Alignment:
Q  101 caaaggagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacatgtt 180  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  39130369 caaaggagaaaacgtggcagttgttttattaaaaaataagctatgaacttggccgttattttttaagccatgaacatgtt 39130290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 101 - 190
Target Start/End: Complemental strand, 48072276 - 48072187
Alignment:
Q  101 caaaggagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacatgttgttttattaa 190  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||    
T  48072276 caaaggagaaaacgtggcagttgttttattagaaaataagctatgaacttggccgttattttttaagccatgaatatattgttttattaa 48072187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 101 - 190
Target Start/End: Original strand, 2228968 - 2229057
Alignment:
Q  101 caaaggagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacatgttgttttattaa 190  Q
    |||||||||||| || ||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2228968 caaaggagaaaatgttgcacttgttttattaaaaaataagctatgaacttgaccgttattttttaagccatgaacatgttgttttattaa 2229057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 106 - 190
Target Start/End: Complemental strand, 7042029 - 7041945
Alignment:
Q  106 gagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacatgttgttttattaa 190  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  7042029 gagaaaacgtggcaattgttttattaaaaaataagctatgaacttggccattattttttaagtcatgaacatgttgttttattaa 7041945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 101 - 222
Target Start/End: Complemental strand, 43861024 - 43860895
Alignment:
Q  101 caaaggagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacatgttgtttt--------attaagt 192  Q
    |||||| ||||||||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||||||| | ||        ||||| |    
T  43861024 caaaggtgaaaacgtggcagttgttttattaaaaaataagttatgaacttgaccgttattttttaagccatgaacatgttttattaaaaaataattaaat 43860925  T
Q  193 taaattaatagggttaaaattagaagaaaa 222  Q
    ||||||||||||||||||||| ||||||||    
T  43860924 taaattaatagggttaaaattggaagaaaa 43860895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 101 - 180
Target Start/End: Complemental strand, 42877530 - 42877451
Alignment:
Q  101 caaaggagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacatgtt 180  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  42877530 caaaggagaaaacgtggcatttgttttattaaaaaataagctatgaacttgaccgttattttttaagccatgaacatgtt 42877451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 105 - 190
Target Start/End: Complemental strand, 22978375 - 22978290
Alignment:
Q  105 ggagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacatgttgttttattaa 190  Q
    |||||||| |||| || ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22978375 ggagaaaatgtggtagctgtttcattaaaaaataagctatgaacttggccgttattttttaagccatgaacatgttgttttattaa 22978290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 101 - 190
Target Start/End: Complemental strand, 50935987 - 50935899
Alignment:
Q  101 caaaggagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacatgttgttttattaa 190  Q
    ||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||| |||||||||||||||||    
T  50935987 caaaggagaaaacatggcagttgttttattaaaaaataagctataaacttggccgttat-ttttaagccatggacatgttgttttattaa 50935899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 104 - 222
Target Start/End: Original strand, 42167136 - 42167262
Alignment:
Q  104 aggagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacatgttgtttt--------attaagttaa 195  Q
    ||||||||||||| || |||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||| | ||        ||||| ||||    
T  42167136 aggagaaaacgtgacaattgttttattaaaaaataagttatgaacttggccgttattttttaagtcatgaacatgttttattaaaaaataattaaattaa 42167235  T
Q  196 attaatagggttaaaattagaagaaaa 222  Q
    |||||||||||||||||| ||||||||    
T  42167236 attaatagggttaaaatttgaagaaaa 42167262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 225
Target Start/End: Original strand, 30742931 - 30742970
Alignment:
Q  186 attaagttaaattaatagggttaaaattagaagaaaatat 225  Q
    ||||| |||||||||||||||||||||| |||||||||||    
T  30742931 attaatttaaattaatagggttaaaattggaagaaaatat 30742970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 225
Target Start/End: Complemental strand, 7041930 - 7041897
Alignment:
Q  192 ttaaattaatagggttaaaattagaagaaaatat 225  Q
    |||||||||||||||||||||| |||||||||||    
T  7041930 ttaaattaatagggttaaaattggaagaaaatat 7041897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 225
Target Start/End: Complemental strand, 22978277 - 22978244
Alignment:
Q  192 ttaaattaatagggttaaaattagaagaaaatat 225  Q
    |||||||||||||||||||||| |||||||||||    
T  22978277 ttaaattaatagggttaaaattggaagaaaatat 22978244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 225
Target Start/End: Complemental strand, 41889009 - 41888976
Alignment:
Q  192 ttaaattaatagggttaaaattagaagaaaatat 225  Q
    |||||||||||||||||||||| |||||||||||    
T  41889009 ttaaattaatagggttaaaattggaagaaaatat 41888976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 225
Target Start/End: Original strand, 43359203 - 43359236
Alignment:
Q  192 ttaaattaatagggttaaaattagaagaaaatat 225  Q
    |||||||||||||||||||||| |||||||||||    
T  43359203 ttaaattaatagggttaaaattggaagaaaatat 43359236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 225
Target Start/End: Complemental strand, 48072174 - 48072141
Alignment:
Q  192 ttaaattaatagggttaaaattagaagaaaatat 225  Q
    |||||||||||||||||||||| |||||||||||    
T  48072174 ttaaattaatagggttaaaattggaagaaaatat 48072141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 225
Target Start/End: Complemental strand, 50935886 - 50935853
Alignment:
Q  192 ttaaattaatagggttaaaattagaagaaaatat 225  Q
    |||||||||||||||||||||| |||||||||||    
T  50935886 ttaaattaatagggttaaaattggaagaaaatat 50935853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 8e-39; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 101 - 225
Target Start/End: Original strand, 24520035 - 24520170
Alignment:
Q  101 caaaggagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacatgttgtttt-----------atta 189  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||           ||||    
T  24520035 caaaggagaaaacgtggcagttgttttattaaaaaataagctatgaacttggccattattttttaagccatgaacatgttgttttgttaaaaaataatta 24520134  T
Q  190 agttaaattaatagggttaaaattagaagaaaatat 225  Q
    | |||||||||||||||||||||| |||||||||||    
T  24520135 aattaaattaatagggttaaaattggaagaaaatat 24520170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 102 - 190
Target Start/End: Complemental strand, 6319827 - 6319739
Alignment:
Q  102 aaaggagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacatgttgttttattaa 190  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  6319827 aaaggagaaaacgtggcagttgttttattaaaaaataagctatgaacttggccgttattttttaagccatgaacatgttgctttattaa 6319739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 102 - 190
Target Start/End: Original strand, 6321941 - 6322029
Alignment:
Q  102 aaaggagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacatgttgttttattaa 190  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6321941 aaaggagaaaacgtggcagttgttttattaaaaaataagctatgaacttggccattattttttaagccatgaacatgttgttttattaa 6322029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 101 - 190
Target Start/End: Complemental strand, 18246976 - 18246887
Alignment:
Q  101 caaaggagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacatgttgttttattaa 190  Q
    |||||||||||||||| ||||| |||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  18246976 caaaggagaaaacgtgacagtttttttattaaaaaataagctatgaacttgaccgttattttttatgccatgaacatgttgttttattaa 18246887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 101 - 190
Target Start/End: Complemental strand, 33179261 - 33179172
Alignment:
Q  101 caaaggagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacatgttgttttattaa 190  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||| ||||| ||||||||||||    
T  33179261 caaaggagaaaacgtggcagttgttttattaaaaaataagctatgaacttgaccattattttttaagccattaacatattgttttattaa 33179172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 101 - 225
Target Start/End: Original strand, 36602534 - 36602665
Alignment:
Q  101 caaaggagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttatttttt-aagccatgaacatgttgttttatta------agtt 193  Q
    ||||||||||||| ||||||| ||||||||||||||||  ||||||| ||| |||||||||||| |||| ||||||||||||||||||||      | ||    
T  36602534 caaaggagaaaacatggcagtggttttattaaaaaatatgctatgaaattgaccgttattttttaaagctatgaacatgttgttttattaaaaaataatt 36602633  T
Q  194 aaattaatagggttaaaattagaagaaaatat 225  Q
    |||||||||||||||||||| |||||||||||    
T  36602634 aaattaatagggttaaaattggaagaaaatat 36602665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 101 - 190
Target Start/End: Complemental strand, 14452601 - 14452512
Alignment:
Q  101 caaaggagaaaacgtggcagttgttttattaa-aaaataatctatgaacttggccgttattttttaagccatgaacatgttgttttattaa 190  Q
    ||||||||||||| |||||||||||||||||| ||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  14452601 caaaggagaaaacatggcagttgttttattaaaaaaataagctatgaacttggccatta-tttttaagccatgaacatgttgttttattaa 14452512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 225
Target Start/End: Complemental strand, 6319726 - 6319693
Alignment:
Q  192 ttaaattaatagggttaaaattagaagaaaatat 225  Q
    |||||||||||||||||||||| |||||||||||    
T  6319726 ttaaattaatagggttaaaattggaagaaaatat 6319693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 225
Target Start/End: Complemental strand, 14452499 - 14452466
Alignment:
Q  192 ttaaattaatagggttaaaattagaagaaaatat 225  Q
    |||||||||||||||||||||| |||||||||||    
T  14452499 ttaaattaatagggttaaaattggaagaaaatat 14452466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 225
Target Start/End: Complemental strand, 18246874 - 18246841
Alignment:
Q  192 ttaaattaatagggttaaaattagaagaaaatat 225  Q
    |||||||||||||||||||||| |||||||||||    
T  18246874 ttaaattaatagggttaaaattggaagaaaatat 18246841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 101 - 190
Target Start/End: Original strand, 71362 - 71451
Alignment:
Q  101 caaaggagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacatgttgttttattaa 190  Q
    ||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  71362 caaaggagaaaacgtgggagttgttttattaaaaaataagttatgaacttggccgttattttttaagccatgaacatgttgttttattaa 71451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 101 - 225
Target Start/End: Original strand, 37707890 - 37708025
Alignment:
Q  101 caaaggagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacatgttgttttattaag--------- 191  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||              
T  37707890 caaaggagaaaacgtggcagtagttttattaaaaaataagctatgaacttggccgttattttttaagccatgaacgtgttgttttattaaaaaataatta 37707989  T
Q  192 --ttaaattaatagggttaaaattagaagaaaatat 225  Q
      |||||||||||||||||||||| |||||||||||    
T  37707990 aattaaattaatagggttaaaattggaagaaaatat 37708025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 101 - 190
Target Start/End: Complemental strand, 33979922 - 33979833
Alignment:
Q  101 caaaggagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacatgttgttttattaa 190  Q
    |||||||||||| ||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  33979922 caaaggagaaaatgtggcagttgttttattaaaaaataagttatgaacttggccattattttttaagccatgaacatgttgttttattaa 33979833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 102 - 225
Target Start/End: Original strand, 33982116 - 33982249
Alignment:
Q  102 aaaggagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacatgttgttttattaag---------- 191  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||               
T  33982116 aaaggagaaaacgtggcagttgttttattaaaaaataagctatgaacttgaccgttattttt-aagccatgaacatgttgttttattaaaaaataattaa 33982214  T
Q  192 -ttaaattaatagggttaaaattagaagaaaatat 225  Q
     |||||||||||||||||||||| |||||||||||    
T  33982215 attaaattaatagggttaaaattggaagaaaatat 33982249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 101 - 180
Target Start/End: Original strand, 585696 - 585775
Alignment:
Q  101 caaaggagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacatgtt 180  Q
    ||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  585696 caaaggagaaaacctgacagttgttttattaaaaaataagctatgaacttggccgttattttttaagccatgaacatgtt 585775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 101 - 225
Target Start/End: Original strand, 1601114 - 1601246
Alignment:
Q  101 caaaggagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacatgttgtttt--------attaagt 192  Q
    |||||||||||| |||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| | ||        ||||| |    
T  1601114 caaaggagaaaatgtggcaattgttttattaaaaaataagctatggacttggccgttattttttaagccatgaacatgttttattaaaaaataattaaat 1601213  T
Q  193 taaattaatagggttaaaattagaagaaaatat 225  Q
    ||||||||||||||||||||| |||| ||||||    
T  1601214 taaattaatagggttaaaattggaaggaaatat 1601246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 101 - 190
Target Start/End: Original strand, 595910 - 595999
Alignment:
Q  101 caaaggagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacatgttgttttattaa 190  Q
    ||||||||||||| || |||||||||||||||||||||| ||||||| ||| ||||||||||||||| ||||||||||||||||||||||    
T  595910 caaaggagaaaacatgacagttgttttattaaaaaataagctatgaatttgaccgttattttttaagtcatgaacatgttgttttattaa 595999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 101 - 190
Target Start/End: Complemental strand, 47253145 - 47253056
Alignment:
Q  101 caaaggagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacatgttgttttattaa 190  Q
    ||||||| |||| ||| | ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47253145 caaaggaaaaaatgtgacggttgttttattaaaaaacaagctatgaacttggccgttattttttaagccatgaacatgttgttttattaa 47253056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 101 - 190
Target Start/End: Original strand, 42833515 - 42833606
Alignment:
Q  101 caaaggagaaaacgtggcagttgttttattaaaaaa--taatctatgaacttggccgttattttttaagccatgaacatgttgttttattaa 190  Q
    ||||||||||||||||||||||||||||||||||||  ||| |||||||||| ||||||||||||||||| |||||||||| ||||||||||    
T  42833515 caaaggagaaaacgtggcagttgttttattaaaaaaaataagctatgaacttagccgttattttttaagctatgaacatgtagttttattaa 42833606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 104 - 180
Target Start/End: Original strand, 43544700 - 43544776
Alignment:
Q  104 aggagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacatgtt 180  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  43544700 aggagaaaatgtggcagttgttttattaaaaaataagctatgaacttgaccgttattttttaagccatgaacatgtt 43544776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 101 - 190
Target Start/End: Complemental strand, 38224928 - 38224839
Alignment:
Q  101 caaaggagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacatgttgttttattaa 190  Q
    ||||||||||||| ||||| || ||||||||||| |||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  38224928 caaaggagaaaacatggcaatttttttattaaaatataaactatgaacttgaccgttattttttatgccatgaacatgttgttttattaa 38224839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 101 - 190
Target Start/End: Complemental strand, 42831496 - 42831406
Alignment:
Q  101 caaaggagaaaacgtggcagttgttttattaaaaaa-taatctatgaacttggccgttattttttaagccatgaacatgttgttttattaa 190  Q
    |||||||| ||| ||| ||||||||||||||||||| ||| ||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  42831496 caaaggaggaaatgtgacagttgttttattaaaaaaataagctatgaacttgaccgttagtttttaagccatgaacatgttgttttattaa 42831406  T

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Target: chr7; HSP #12
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 118 - 190
Target Start/End: Complemental strand, 41406486 - 41406414
Alignment:
Q  118 cagttgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacatgttgttttattaa 190  Q
    ||||||||||||||||||||||  |||||| || |||||||||||||||||||||||||||||||||||||||    
T  41406486 cagttgttttattaaaaaataaattatgaattttgccgttattttttaagccatgaacatgttgttttattaa 41406414  T

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Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 225
Target Start/End: Complemental strand, 33979814 - 33979781
Alignment:
Q  192 ttaaattaatagggttaaaattagaagaaaatat 225  Q
    |||||||||||||||||||||| |||||||||||    
T  33979814 ttaaattaatagggttaaaattggaagaaaatat 33979781  T

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Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 225
Target Start/End: Complemental strand, 42831393 - 42831360
Alignment:
Q  192 ttaaattaatagggttaaaattagaagaaaatat 225  Q
    ||||||||||| ||||||||||||||||||||||    
T  42831393 ttaaattaataaggttaaaattagaagaaaatat 42831360  T

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Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 225
Target Start/End: Complemental strand, 47253043 - 47253010
Alignment:
Q  192 ttaaattaatagggttaaaattagaagaaaatat 225  Q
    |||||||||||||||||||||| |||||||||||    
T  47253043 ttaaattaatagggttaaaattggaagaaaatat 47253010  T

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Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 101 - 225
Target Start/End: Original strand, 5101809 - 5101944
Alignment:
Q  101 caaaggagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacatgttgttttattaag--------- 191  Q
    ||||| |||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||              
T  5101809 caaagaagaaaacgtgacagttgttttattaaaaaacaagctatgaacttggccgttattttttaagccatgaacacgttgttttattaaaaaataatta 5101908  T
Q  192 --ttaaattaatagggttaaaattagaagaaaatat 225  Q
      |||||||||||||||||||||| |||||||||||    
T  5101909 ttttaaattaatagggttaaaattggaagaaaatat 5101944  T

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Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 101 - 180
Target Start/End: Complemental strand, 3034321 - 3034242
Alignment:
Q  101 caaaggagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacatgtt 180  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  3034321 caaaggagaaaacgtgacagttgttttattaaaaaataagctatgaacttggccgttattttttaagccatgagcatgtt 3034242  T

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Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 101 - 225
Target Start/End: Original strand, 37253166 - 37253298
Alignment:
Q  101 caaaggagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacatgttgtttt--------attaagt 192  Q
    |||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||| | ||        ||||| |    
T  37253166 caaaagagaaaacgtggcagttgttttattaaacaataagctatgaacttggccgttattttttaagccatgaacgtgttttattaaaaaataattaaat 37253265  T
Q  193 taaattaatagggttaaaattagaagaaaatat 225  Q
    |||||||||||||||||||||  ||||||||||    
T  37253266 taaattaatagggttaaaattgaaagaaaatat 37253298  T

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Target: chr5; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 101 - 180
Target Start/End: Complemental strand, 8524152 - 8524073
Alignment:
Q  101 caaaggagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattttttaagccatgaacatgtt 180  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||    
T  8524152 caaaggagaaaatgtggcagttgttttattaaaaaataagctatgaacttggccattatcttttaagccatgaacatgtt 8524073  T

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Target: chr5; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 104 - 163
Target Start/End: Original strand, 15526643 - 15526702
Alignment:
Q  104 aggagaaaacgtggcagttgttttattaaaaaataatctatgaacttggccgttattttt 163  Q
    |||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||    
T  15526643 aggagaaaacatggcagttattttattaaaaaataagctatgaacttggccgttattttt 15526702  T

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Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 140
Target Start/End: Complemental strand, 15524605 - 15524566
Alignment:
Q  101 caaaggagaaaacgtggcagttgttttattaaaaaataat 140  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  15524605 caaaggagaaaacgtggcatttgttttattaaaaaataat 15524566  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 6789501 - 6789548
Alignment:
Q  178 gttgttttattaagttaaattaatagggttaaaattagaagaaaatat 225  Q
    ||||||| ||||| ||||||||||||||||||| || |||||||||||    
T  6789501 gttgtttaattaatttaaattaatagggttaaagttggaagaaaatat 6789548  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 225
Target Start/End: Original strand, 15527023 - 15527062
Alignment:
Q  186 attaagttaaattaatagggttaaaattagaagaaaatat 225  Q
    ||||| |||||||||||||||||||||| |||||||||||    
T  15527023 attaaattaaattaatagggttaaaatttgaagaaaatat 15527062  T

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Target: scaffold0009 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 190
Target Start/End: Original strand, 94251 - 94292
Alignment:
Q  149 ttggccgttattttttaagccatgaacatgttgttttattaa 190  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  94251 ttggccggtattttttaagccatgaacatgttgttttattaa 94292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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