View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10174_low_71 (Length: 243)
Name: NF10174_low_71
Description: NF10174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10174_low_71 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 7310018 - 7310255
Alignment:
| Q |
1 |
attattctcaagattatagcctgcccacaagttacaaaatgtagtacttggaacaatcagatctgtacaaaggaggtaattaacttgggaaagatggaat |
100 |
Q |
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| T |
7310018 |
attattctcaagattatagcctgccaacaagttacaaaatgtagtgcttggaacaatcagatctgaacaaaggaagtaattaacttgggaaagatggaat |
7310117 |
T |
|
| Q |
101 |
ttgataatagagttttccccattctcaagtttccgaaactcttctaattcattttcagatgcattagtaacatgaccctaaatcagaactggatgcatca |
200 |
Q |
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| T |
7310118 |
ttgataataaagttttcccctttctcaagtttccgaagttcttctaattcattttcagatgcatcagtaacatgaccctaaatcagaactggatgcatca |
7310217 |
T |
|
| Q |
201 |
gactttgtgatcagatttatagaatattgatgtccatc |
238 |
Q |
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| T |
7310218 |
gactttgtgatcagatttatagaatattgttgtgcatc |
7310255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 105 - 229
Target Start/End: Complemental strand, 7329857 - 7329734
Alignment:
| Q |
105 |
taatagagttttccccattctcaagtttccgaaactcttctaattcattttcagatgcattagtaacatgaccctaaatcagaactggatgcatcagact |
204 |
Q |
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| T |
7329857 |
taatagagttttcctcattctcaagtttccaaagttcatttcattcattt-cagattcattagttacatgaccttaaatcagaactggatgcatcagact |
7329759 |
T |
|
| Q |
205 |
ttgtgatcagatttatagaatattg |
229 |
Q |
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| T |
7329758 |
ttgtgatcagatttatagaatattg |
7329734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 150 - 204
Target Start/End: Original strand, 7300843 - 7300897
Alignment:
| Q |
150 |
cattttcagatgcattagtaacatgaccctaaatcagaactggatgcatcagact |
204 |
Q |
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| T |
7300843 |
cattttcggatgcattagtaacatgaccctaaatcagaactggatgcatcagact |
7300897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 190
Target Start/End: Complemental strand, 13899003 - 13898963
Alignment:
| Q |
150 |
cattttcagatgcattagtaacatgaccctaaatcagaact |
190 |
Q |
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| T |
13899003 |
cattttcatatgcattagtaacttgaccctaaatcagaact |
13898963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 190
Target Start/End: Complemental strand, 13569182 - 13569143
Alignment:
| Q |
151 |
attttcagatgcattagtaacatgaccctaaatcagaact |
190 |
Q |
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| T |
13569182 |
attttcatatgcattagtaacttgaccctaaatcagaact |
13569143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 190
Target Start/End: Original strand, 24552759 - 24552799
Alignment:
| Q |
150 |
cattttcagatgcattagtaacatgaccctaaatcagaact |
190 |
Q |
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|||||||| ||||||||||||| |||||||||||||||||| |
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|
| T |
24552759 |
cattttcatatgcattagtaacttgaccctaaatcagaact |
24552799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 190
Target Start/End: Complemental strand, 23964039 - 23964003
Alignment:
| Q |
154 |
ttcagatgcattagtaacatgaccctaaatcagaact |
190 |
Q |
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| T |
23964039 |
ttcagatgcattagtaacttgagcctaaatcagaact |
23964003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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