View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10174_low_74 (Length: 241)

Name: NF10174_low_74
Description: NF10174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10174_low_74
NF10174_low_74
[»] chr4 (2 HSPs)
chr4 (153-225)||(34860802-34860874)
chr4 (59-95)||(19487539-19487575)
[»] chr3 (1 HSPs)
chr3 (49-95)||(7546141-7546187)
[»] chr8 (2 HSPs)
chr8 (59-95)||(150926-150962)
chr8 (60-96)||(24190937-24190973)
[»] chr1 (1 HSPs)
chr1 (59-95)||(32713223-32713259)


Alignment Details
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 153 - 225
Target Start/End: Original strand, 34860802 - 34860874
Alignment:
Q  153 cggcagagagatttagttgaaagtgaattgcttttgtttggggtgctagtacaagtcatgttcgactcatttt 225  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||    
T  34860802 cggcagagagatttagttgaaagtgaatggcttttgtttggggtgctagaacaagtcatgttcgactgatttt 34860874  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 19487575 - 19487539
Alignment:
Q  59 tagcgtgagttaacccacgcagcgtgagttaagtcac 95  Q
    |||| ||||||||| ||||||||||||||||||||||    
T  19487575 tagcatgagttaactcacgcagcgtgagttaagtcac 19487539  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 49 - 95
Target Start/End: Complemental strand, 7546187 - 7546141
Alignment:
Q  49 ttaactcacgtagcgtgagttaacccacgcagcgtgagttaagtcac 95  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||||||    
T  7546187 ttaactcacgtagcgtgacttaactcacacagcgtgagttaagtcac 7546141  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 150926 - 150962
Alignment:
Q  59 tagcgtgagttaacccacgcagcgtgagttaagtcac 95  Q
    |||||||||||||| |||||| |||||||||||||||    
T  150926 tagcgtgagttaactcacgcaacgtgagttaagtcac 150962  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 24190937 - 24190973
Alignment:
Q  60 agcgtgagttaacccacgcagcgtgagttaagtcaca 96  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  24190937 agcgtgagttaactcacgcagcgtgacttaagtcaca 24190973  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 32713259 - 32713223
Alignment:
Q  59 tagcgtgagttaacccacgcagcgtgagttaagtcac 95  Q
    |||||||||||||| |||||||||||| |||||||||    
T  32713259 tagcgtgagttaactcacgcagcgtgacttaagtcac 32713223  T

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