View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10174_low_76 (Length: 240)

Name: NF10174_low_76
Description: NF10174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10174_low_76
NF10174_low_76
[»] chr8 (16 HSPs)
chr8 (18-240)||(15964266-15964490)
chr8 (18-240)||(19149706-19149938)
chr8 (18-240)||(15982745-15982978)
chr8 (18-112)||(15954174-15954268)
chr8 (18-112)||(16005688-16005782)
chr8 (18-119)||(19186510-19186611)
chr8 (168-240)||(16005865-16005937)
chr8 (168-240)||(15954341-15954413)
chr8 (166-240)||(19186676-19186750)
chr8 (183-240)||(15942793-15942850)
chr8 (187-240)||(15977178-15977231)
chr8 (18-100)||(15941987-15942069)
chr8 (125-236)||(16050694-16050807)
chr8 (66-100)||(15698171-15698205)
chr8 (47-103)||(19356560-19356616)
chr8 (47-103)||(19501592-19501648)


Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 15964490 - 15964266
Alignment:
Q  18 tattcatcaataattgtggcaaccaatggcttttcatcagaaaacaagttaggacaaggtggctttggacctgttttcaaggtgaccctt-ttttatagt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  15964490 tattcatcaataattgtggcaaccaatggcttttcatcagaaaacaagttaggacaaggtggctttggacctgttttcaaggtgaccctttttttatagt 15964391  T
Q  117 ttttctgagatgaaacagttgcgattattcagtcatcggttttttaata-gcttttatattcaacacagggaattctaccttcagggcaagaagtagctg 215  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||| | |||||| |||||||    
T  15964390 ttttctgagatgaaacagttgcgattattgagtcatcggttttttaatatgcttttaaattcaacacagggaattctaccttcggagcaagaggtagctg 15964291  T
Q  216 tgaagaaactttcaaaaacttctgg 240  Q
    ||||||||||||||||||| |||||    
T  15964290 tgaagaaactttcaaaaacatctgg 15964266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 19149938 - 19149706
Alignment:
Q  18 tattcatcaataattgtggcaaccaatggcttttcatcagaaaacaagttaggacaaggtggctttggacctgttttcaaggtgacccttttttatagtt 117  Q
    |||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  19149938 tattcatcaataattgtggctaccaatggcttttcttctgaaaacaagttaggacaaggtggctttggacctgttttcaaggtgacccttttt--tagtt 19149841  T
Q  118 tttctgaga----------tgaaacagttgcgattattcagtcatcggtttt-ttaat-agcttttatattcaacacagggaattctaccttcagggcaa 205  Q
    || ||||||          ||||| ||||  |||||| || |||||  |||| ||||| |  ||||||||| ||  ||||||||||||||||||||||||    
T  19149840 ttgctgagatggtggctcctgaaatagtttagattatgcattcatccattttattaatgatattttatatttaattcagggaattctaccttcagggcaa 19149741  T
Q  206 gaagtagctgtgaagaaactttcaaaaacttctgg 240  Q
    |||||||||||||||||||||||||||||||||||    
T  19149740 gaagtagctgtgaagaaactttcaaaaacttctgg 19149706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 15982978 - 15982745
Alignment:
Q  18 tattcatcaataattgtggcaaccaatggcttttcatcagaaaacaagttaggacaaggtggctttggacctgttttcaaggtgacccttttttatagtt 117  Q
    ||||||||||||||||| || |||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  15982978 tattcatcaataattgttgctaccagtggcttttcttctgaaaacaagttaggacaaggtggctttggacctgttttcaaggtgacccttttt--tagtt 15982881  T
Q  118 tttctgaga----------tgaaacagttgcgattattcagtcatcggtttt-ttaat--agcttttatattcaacacagggaattctaccttcagggca 204  Q
    || ||||||          ||||| ||||  |||||| || | |||  |||| |||||  || ||||||||||||  |||||||||||||||||||||||    
T  15982880 ttgctgagatggtggcttctgaaatagtttagattatgcatttatccattttattaatgaagtttttatattcaattcagggaattctaccttcagggca 15982781  T
Q  205 agaagtagctgtgaagaaactttcaaaaacttctgg 240  Q
    ||||||||||||||||||||||||||||||||||||    
T  15982780 agaagtagctgtgaagaaactttcaaaaacttctgg 15982745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 15954174 - 15954268
Alignment:
Q  18 tattcatcaataattgtggcaaccaatggcttttcatcagaaaacaagttaggacaaggtggctttggacctgttttcaaggtgaccctttttta 112  Q
    |||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15954174 tattcatcaataattgtggctaccaatggcttttcttctgaaaacaagttaggacaaggtggctttggacctgttttcaaggtgaccctttttta 15954268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 16005688 - 16005782
Alignment:
Q  18 tattcatcaataattgtggcaaccaatggcttttcatcagaaaacaagttaggacaaggtggctttggacctgttttcaaggtgaccctttttta 112  Q
    |||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  16005688 tattcatcaataattgtggccaccaatggcttttcttctgaaaacaagttaggacaaggtggctttgaacctgtttttaaggtgaccctttttta 16005782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 19186510 - 19186611
Alignment:
Q  18 tattcatcaataattgtggcaaccaatggcttttcatcagaaaacaagttaggacaaggtggctttggacctgttttcaaggtgacccttttttatagtt 117  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||  |||| |||||||    
T  19186510 tattcatcaatacttgtggctaccaatggcttttcatcagaaaacaagttaggacagggtggctttggacctgtttttaaggtgacatttttgtatagtt 19186609  T
Q  118 tt 119  Q
    ||    
T  19186610 tt 19186611  T

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Target: chr8; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 168 - 240
Target Start/End: Original strand, 16005865 - 16005937
Alignment:
Q  168 ttttatattcaacacagggaattctaccttcagggcaagaagtagctgtgaagaaactttcaaaaacttctgg 240  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16005865 ttttatattcaattcagggaattctaccttcagggcaagaagtagctgtgaagaaactttcaaaaacttctgg 16005937  T

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Target: chr8; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 168 - 240
Target Start/End: Original strand, 15954341 - 15954413
Alignment:
Q  168 ttttatattcaacacagggaattctaccttcagggcaagaagtagctgtgaagaaactttcaaaaacttctgg 240  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  15954341 ttttatattcaattcagggaattctaccttcagggcaagaagtagctgtgaagaaactttcacaaacttctgg 15954413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 166 - 240
Target Start/End: Original strand, 19186676 - 19186750
Alignment:
Q  166 gcttttatattcaacacagggaattctaccttcagggcaagaagtagctgtgaagaaactttcaaaaacttctgg 240  Q
    ||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  19186676 gcttttatattcaattcagggaattctaccttcggggcaagaagtagctgtgaagaaactttcaaaaacatctgg 19186750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 183 - 240
Target Start/End: Original strand, 15942793 - 15942850
Alignment:
Q  183 agggaattctaccttcagggcaagaagtagctgtgaagaaactttcaaaaacttctgg 240  Q
    |||||||||||||||| |||||||||||||||||||| | |||||||||| |||||||    
T  15942793 agggaattctaccttctgggcaagaagtagctgtgaaaagactttcaaaatcttctgg 15942850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 15977231 - 15977178
Alignment:
Q  187 aattctaccttcagggcaagaagtagctgtgaagaaactttcaaaaacttctgg 240  Q
    |||||||||||| | ||||||||||||||||||||||||||||| |||||||||    
T  15977231 aattctaccttctgagcaagaagtagctgtgaagaaactttcaagaacttctgg 15977178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 15941987 - 15942069
Alignment:
Q  18 tattcatcaataattgtggcaaccaatggcttttcatcagaaaacaagttaggacaaggtggctttggacctgttttcaaggt 100  Q
    |||||||||||||  || || || |||| ||||||||| ||||||||||||||||| |||||||||||| | ||||| |||||    
T  15941987 tattcatcaataaaagtagctactaatgacttttcatctgaaaacaagttaggacagggtggctttggatcggtttttaaggt 15942069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 125 - 236
Target Start/End: Complemental strand, 16050807 - 16050694
Alignment:
Q  125 gatgaaacagttgcgattattcagtcatcggttttttaata--gcttttatattcaacacagggaattctaccttcagggcaagaagtagctgtgaagaa 222  Q
    ||||||||| ||| ||||||  |||||| |||||| |||||  | ||||||||| || |||  ||||| ||| || |||| ||||||||| |||||||||    
T  16050807 gatgaaacaattgagattatgtagtcattggttttataataatgtttttatatttaatacaatgaattatacattgagggtaagaagtagttgtgaagaa 16050708  T
Q  223 actttcaaaaactt 236  Q
    ||||||||||||||    
T  16050707 actttcaaaaactt 16050694  T

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Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 100
Target Start/End: Complemental strand, 15698205 - 15698171
Alignment:
Q  66 ttaggacaaggtggctttggacctgttttcaaggt 100  Q
    |||||| ||||||||||||||||||||||||||||    
T  15698205 ttaggagaaggtggctttggacctgttttcaaggt 15698171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 103
Target Start/End: Original strand, 19356560 - 19356616
Alignment:
Q  47 cttttcatcagaaaacaagttaggacaaggtggctttggacctgttttcaaggtgac 103  Q
    ||||||||| ||||||||||||||||| || |||| |||||| ||||  ||||||||    
T  19356560 cttttcatctgaaaacaagttaggacagggaggctatggacccgtttataaggtgac 19356616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 103
Target Start/End: Complemental strand, 19501648 - 19501592
Alignment:
Q  47 cttttcatcagaaaacaagttaggacaaggtggctttggacctgttttcaaggtgac 103  Q
    ||||||| | ||||||||||||||||| || |||| |||||||||||  ||||||||    
T  19501648 cttttcacctgaaaacaagttaggacagggaggctatggacctgtttataaggtgac 19501592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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