View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10174_low_80 (Length: 238)
Name: NF10174_low_80
Description: NF10174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10174_low_80 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 8300609 - 8300387
Alignment:
| Q |
1 |
cagatctatctcgagtaaaatttcttgccttgttaatttcattttcaaagtttgaagaatgaaaaactctgtctttaatattctgaaaattttgctcatg |
100 |
Q |
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| T |
8300609 |
cagatctatctcgagtaaaatttcttgccttgttaatttcattttcaaagtttgaagaatgaaaaactctgtctttaatattctgaaaattttgctcatg |
8300510 |
T |
|
| Q |
101 |
gtgttaacctctgcattcctaattccatgtcctgtatggtacttattgagggagctgaaaaagtttcggttcatcttataaacatgaagtatggtggttt |
200 |
Q |
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| T |
8300509 |
gtgttaacctctgcattcctaattccatgtcctgtatggtaattattcagggagctgaaaaagtttcggttcatcttataaacatgaagtagggtggttt |
8300410 |
T |
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| Q |
201 |
ttatttttgtttatatagaaaat |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
8300409 |
ttatttttgtttatatagaaaat |
8300387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 7 - 223
Target Start/End: Complemental strand, 8297025 - 8296810
Alignment:
| Q |
7 |
tatctcgagtaaaatttcttgccttgttaatttcattttcaaagtttgaagaatgaaaaactctgtctttaatattctgaaaattttgctcatg------ |
100 |
Q |
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| T |
8297025 |
tatctctagtaaaatttcttgccttgttaatttca--------gtttgaagcatgaaaaactctgtatttaacattctgaaaattctgctcatgatgtta |
8296934 |
T |
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| Q |
101 |
-gtgttaacctctgcattcctaattccatgtcctgtatggtacttattgagggagctgaaaaagtttcggttcatcttataaacatgaagtatggtggtt |
199 |
Q |
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| T |
8296933 |
agtgttaacctctgcattgctaatttcatgtcctgtatggtacttattcagggagctgaaaaagtttcggttcatcttataaacatgaagtagggtggtt |
8296834 |
T |
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| Q |
200 |
tttatttttgtttatatagaaaat |
223 |
Q |
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| T |
8296833 |
tttatttttgtttatatagaaaat |
8296810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 7 - 166
Target Start/End: Original strand, 18279625 - 18279782
Alignment:
| Q |
7 |
tatctcgagtaaaatttcttgccttgttaatttcattttcaaagtttgaagaatgaaaaactctgtctttaatattctgaaaattttgctcatggtgtta |
106 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| | ||||||||| ||||| |
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| T |
18279625 |
tatctcgagtaaaatttcttggcttgttaatttcattttcaaagtttgaagcatgaaaaact--gtctttaatattctgaaagtattgctcatgatgtta |
18279722 |
T |
|
| Q |
107 |
acctctgcattcctaattccatgtcctgtatggtacttattgagggagctgaaaaagttt |
166 |
Q |
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| T |
18279723 |
acctctgcatagctaatttcatgtcctgtatggtacttattcagggatctgaaaaagttt |
18279782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 134
Target Start/End: Complemental strand, 8296768 - 8296675
Alignment:
| Q |
39 |
tcattttcaaagtttgaagaatgaaaaactctgtctttaatattctgaaaattttgctcatggtgttaacctctgcattcctaattccatgtcctg |
134 |
Q |
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| T |
8296768 |
tcatcttcaatgtttgaagtatgtaaaactatgtctgttatattctgaaaatttt--tcttgatgttatcctctgctttgctaatttcatgtcctg |
8296675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 7 - 163
Target Start/End: Complemental strand, 1145227 - 1145074
Alignment:
| Q |
7 |
tatctcgagtaaaatttcttgccttgttaatttcattttcaaagtttgaagaatgaaaaactctgtctttaatattctgaaaattttgctcatggtgtta |
106 |
Q |
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||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| || || || |
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| T |
1145227 |
tatctcgagtaaaatatcttgcctggttaatttcattttcaaagtttgaagcatgaaaaactctg--tttaatattctgaaaattttgctcttgatg-ta |
1145131 |
T |
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| Q |
107 |
acctctgcattcctaattccatgtcctgtatggtacttattgagggagctgaaaaag |
163 |
Q |
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| T |
1145130 |
acctctgctttgctaatttcatgtcttgtatggtaattattcagggaggtgcaaaag |
1145074 |
T |
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