View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10174_low_85 (Length: 229)
Name: NF10174_low_85
Description: NF10174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10174_low_85 |
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| [»] chr5 (2 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 20432303 - 20432525
Alignment:
| Q |
7 |
gtggtagggtatttcctacttcgaaataatgtatcaaccatatggctaatcgttagtgattttgaaagaatgtacgaaccacatgctttatgttatgttt |
106 |
Q |
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|||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20432303 |
gtggtagggtattttctacttcgaaataatgtatcaaccacatggctaatcgtcagtgattttgaaagaatgtacgaaccacatgctttatgttatgttt |
20432402 |
T |
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| Q |
107 |
ttgaaaaaatggaagaatgtatgaaccacatgctttatggtatatttttgaataaatttttgatcattatttgatcaatttaaagtgtcattgtttagga |
206 |
Q |
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| T |
20432403 |
ttgaaaaaatggaagaatgtatgaaccacatgctttatggtatatttttgaataaatttttgatcattatttgatcaatttaaagtgtcatcgtttagga |
20432502 |
T |
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| Q |
207 |
tttttaaattatatctatgagtt |
229 |
Q |
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||||||||||||||||||||||| |
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| T |
20432503 |
tttttaaattatatctatgagtt |
20432525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 20426738 - 20426958
Alignment:
| Q |
7 |
gtggtagggtatttcctacttcgaaataatgtatcaaccatatggctaatcgttagtgattttgaaagaatgtacgaaccacatgctttatgttatgttt |
106 |
Q |
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||||||| ||||||||||||||| || ||||||||||||| ||| |||||| | | ||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
20426738 |
gtggtagtgtatttcctacttcggaagaatgtatcaaccacatgactaatcttcactgattttaaaagaatgtacgaaccacatgctttattttatgttt |
20426837 |
T |
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| Q |
107 |
ttgaaaaaatggaagaatgtatgaaccacatgctttatggtatatttttgaataaatttttgatcattatttgatcaatttaaagtgtcattgtttagga |
206 |
Q |
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| T |
20426838 |
ttgaataaatgaaagaatgtatgaaccacatgctttatgttata-ttttgaataaatttttgatcattatttgatcaatttacagtgttatattttagga |
20426936 |
T |
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| Q |
207 |
tttttaaattatatctatgagtt |
229 |
Q |
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| T |
20426937 |
-ttttaaattatatctataagtt |
20426958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 5328214 - 5328435
Alignment:
| Q |
7 |
gtggtagggtatttcctacttcgaaataatgtatcaaccatatggctaatcgttagtgattttgaaagaatgtacgaaccacatgctttatgttatgttt |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5328214 |
gtggtagggtatttcctacttcgaaataatgtatcaaccacatggctaatcgtcaatgattttgaaagaatgtacgaaccacatgctttatgttatgttt |
5328313 |
T |
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| Q |
107 |
ttgaaaaaatggaagaatgtatgaaccacatgctttatggtatatttttgaataaatttttgatcattatttgatcaatttaaagtgtcattgtttagga |
206 |
Q |
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|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | || |
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| T |
5328314 |
ttgaaaaaatggaagaatatatgaaccacatgctttttggtatatttttgaataaatttttgatcattatttgatcaatttaaagtgtcatcgttcaaga |
5328413 |
T |
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| Q |
207 |
tttttaaattatatctatgagtt |
229 |
Q |
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| T |
5328414 |
-ttttaaattatatctatgagtt |
5328435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 5319489 - 5319709
Alignment:
| Q |
7 |
gtggtagggtatttcctacttcgaaataatgtatcaaccatatggctaatcgttagtgattttgaaagaatgtacgaaccacatgctttatgttatgttt |
106 |
Q |
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||||||| ||||||||||||||| || ||||||||||||| ||| |||||| | | ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5319489 |
gtggtagtgtatttcctacttcggaagaatgtatcaaccacatgactaatcttcactgattttaaaagaatgtacgaaccacatgctttatgttatgttt |
5319588 |
T |
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| Q |
107 |
ttgaaaaaatggaagaatgtatgaaccacatgctttatggtatatttttgaataaatttttgatcattatttgatcaatttaaagtgtcattgtttagga |
206 |
Q |
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| T |
5319589 |
ttgaataaataaaagaatgtatgaaccacatgctttatgttata-ttttgaataaatttttgatcattatttgatcaatttaaagtgttatattttagga |
5319687 |
T |
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| Q |
207 |
tttttaaattatatctatgagtt |
229 |
Q |
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||||||||||||||||| |||| |
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| T |
5319688 |
-ttttaaattatatctataagtt |
5319709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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