View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10174_low_86 (Length: 229)
Name: NF10174_low_86
Description: NF10174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10174_low_86 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 9e-97; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 15964265 - 15964051
Alignment:
| Q |
1 |
acaaggaatgacggagtttagaaatgaattaacactcatttgtaagcttcagcatacaaatcttgttcggctaatcggtcattgcattcatgaacgagag |
100 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15964265 |
acaaggaatgactgagtttagaaatgaattaacactcatttgtaagcttcagcatacaaatcttgttcggctaatcggtcattgcattcatgaacgagag |
15964166 |
T |
|
| Q |
101 |
agaatgttaatctacgagtatatgcccaacaaaagtttggacttctttttatttggtaagatatattaatttctacaatttcttaaggttgtgta-tgaa |
199 |
Q |
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|
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||| |||| |
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| T |
15964165 |
agaatgttgatctatgagtatatgcccaacaaaagtttggacttctttttatttggtgagatatattgattgctacaatttcttaaggttgtgtattgaa |
15964066 |
T |
|
| Q |
200 |
tatttgtgtgacctt |
214 |
Q |
| |
|
|||||| |||||||| |
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|
| T |
15964065 |
tatttgggtgacctt |
15964051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 19186751 - 19186942
Alignment:
| Q |
1 |
acaaggaatgacggagtttagaaatgaattaacactcatttgtaagcttcagcatacaaatcttgttcggctaatcggtcattgcattcatgaacgagag |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
19186751 |
acaaggaatgattgagtttagaaatgaattaacactcatttgtaagcttcagcatacaaatcttgttcaactaatcggtcattgcattcatgaacgagag |
19186850 |
T |
|
| Q |
101 |
agaatgttaatctacgagtatatgcccaacaaaagtttggacttctttttatttggtaagatatattaatttctacaatttcttaaggttgt |
192 |
Q |
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|||||||| ||||| ||||||||||| |||| ||| ||||||||||||||||||||| || |||||| ||| |||||| |||||||||||| |
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| T |
19186851 |
agaatgttgatctatgagtatatgccaaacagaagcttggacttctttttatttggtgaggtatattgattgatacaatctcttaaggttgt |
19186942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 19149705 - 19149535
Alignment:
| Q |
1 |
acaaggaatgacggagtttagaaatgaattaacactcatttgtaagcttcagcatacaaatcttgttcggctaatcggtcattgcattcatgaacgagag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
19149705 |
acaaggaatgacggagtttagaaatgaattaacactcatttgtaagcttcagcatacaaatcttgttcaactaatcggtcattgcattcatgaacaagag |
19149606 |
T |
|
| Q |
101 |
agaatgttaatctacgagtatatgcccaacaaaagtttggacttctttttatttggtaagatatattaatt |
171 |
Q |
| |
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| || || ||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
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|
| T |
19149605 |
cggatattgatctatgagtatatgcccaacaaaagcttggacttctttttatttggtgagatatattaatt |
19149535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 16005938 - 16006127
Alignment:
| Q |
1 |
acaaggaatgacggagtttagaaatgaattaacactcatttgtaagcttcagcatacaaatcttgttcggctaatcggtcattgcattcatgaacgagag |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||| |
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| T |
16005938 |
acaaggaatgactgagtttagaaatgaattaacactcattagtaagcttcagcatacgaatcttgttcggctaatcggacattgcattcatgaacatgag |
16006037 |
T |
|
| Q |
101 |
agaatgttaatctacgagtatatgcccaacaaaagtttggacttctttttatttggtaagatatattaatttctacaatttcttaaggtt |
190 |
Q |
| |
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| || || ||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||| | |||||||||| |
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| T |
16006038 |
cgtatattgatctatgagtatatgcccaacaaaagcttggacttctttttatttggtgagatatattaattgctacagtctcttaaggtt |
16006127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 15954430 - 15954622
Alignment:
| Q |
17 |
tttagaaatgaattaacactcatttgtaagcttcagcatacaaatcttgttcggctaatcggtcattgcattcatgaacgagagagaatgttaatctacg |
116 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| | || || ||||| | |
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|
| T |
15954430 |
tttaaaaatgaattaacactcatttgtaagcttcagcatacaaatcttgttcggctaatcggacattgcattcatgaacaagagcggatattgatctatg |
15954529 |
T |
|
| Q |
117 |
agtatatgcccaacaaaagtttggacttctttttatttggtaagatatattaatttctacaatttcttaaggttgtgtat-gaatatttgtgt |
208 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |||||| |||||| | ||||| |||||||||||| ||| |||||||||||| |
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|
| T |
15954530 |
agtatatgcccaacaaaagcttggacttctttttatttggtgagatatgttaattgcgacaatctcttaaggttgtttatggaatatttgtgt |
15954622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 15982744 - 15982575
Alignment:
| Q |
1 |
acaaggaatgacggagtttagaaatgaattaacactcatttgtaagcttcagcatacaaatcttgttcggctaatcggtcattgcattcatgaacgagag |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||| |
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| T |
15982744 |
acaaggaatgaccgagtttagaaatgaattaactctcatttgtaagcttcagcataccaatcttgttcaactaatcggtcattgcattcatgaacaagag |
15982645 |
T |
|
| Q |
101 |
agaatgttaatctacgagtatatgcccaacaaaagtttggacttctttttatttggtaagatatattaat |
170 |
Q |
| |
|
| || || ||||| ||||||||||| |||||||| ||||||||||||||||||||| |||||||||||| |
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|
| T |
15982644 |
cgtatattgatctatgagtatatgcctaacaaaagcttggacttctttttatttggtgagatatattaat |
15982575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 17 - 157
Target Start/End: Original strand, 15942867 - 15943007
Alignment:
| Q |
17 |
tttagaaatgaattaacactcatttgtaagcttcagcatacaaatcttgttcggctaatcggtcattgcattcatgaacgagagagaatgttaatctacg |
116 |
Q |
| |
|
|||| ||||||||||| ||||| |||||||| |||||||||||||| |||| |||||| ||||| ||||||||||||| ||||||||| |||||||| | |
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|
| T |
15942867 |
tttaaaaatgaattaaatctcatatgtaagctccagcatacaaatctggttcagctaataggtcactgcattcatgaacaagagagaatattaatctatg |
15942966 |
T |
|
| Q |
117 |
agtatatgcccaacaaaagtttggacttctttttatttggt |
157 |
Q |
| |
|
||||| | || || ||||||||||||||||||||||||||| |
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|
| T |
15942967 |
agtatcttccaaataaaagtttggacttctttttatttggt |
15943007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 16050691 - 16050500
Alignment:
| Q |
17 |
tttagaaatgaattaacactcatttgtaagcttcagcatacaaatcttgttcggctaatcggtcattgcattcatgaacgagagagaatgttaatctacg |
116 |
Q |
| |
|
|||||||| ||| || ||||||||||||||||| ||||||||||| || | ||||| |||||||| ||||||||| |||||||||||| |||| |
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|
| T |
16050691 |
tttagaaaggaactatcactcatttgtaagcttaagcatacaaattcggtacatctaattggtcattgagttcatgaacaagagagaatgttgatctgtc |
16050592 |
T |
|
| Q |
117 |
agtatatgcccaacaaaagtttggacttctttttatttggtaagatatattaatttctacaatttcttaaggttgtgtatgaatatttgtgt |
208 |
Q |
| |
|
| |||||||| |||||||| ||||| ||||||||||||| | ||| ||||||||| ||| | | |||||| ||| ||||| || |||||||| |
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|
| T |
16050591 |
aatatatgcctaacaaaagcttggagttctttttatttgatgagaaatattaattgctatagtctcttaaagttctgtattaagatttgtgt |
16050500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 154
Target Start/End: Original strand, 19190330 - 19190467
Alignment:
| Q |
17 |
tttagaaatgaattaacactcatttgtaagcttcagcatacaaatcttgttcggctaatcggtcattgcattcatgaacgagagagaatgttaatctacg |
116 |
Q |
| |
|
|||||||| |||||||||||||| || ||||| |||||||||||||| |||| ||| ||||| ||||||||| || ||| ||||||| ||||| | |
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|
| T |
19190330 |
tttagaaacgaattaacactcatctgcaagctccagcatacaaatctggttcagctgcaaggtcactgcattcataaagaagaacgaatgttgatctatg |
19190429 |
T |
|
| Q |
117 |
agtatatgcccaacaaaagtttggacttctttttattt |
154 |
Q |
| |
|
||||| || | || ||||| |||||||||||||||||| |
|
|
| T |
19190430 |
agtatttgtcaaataaaagcttggacttctttttattt |
19190467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 157
Target Start/End: Original strand, 19453920 - 19454030
Alignment:
| Q |
47 |
cttcagcatacaaatcttgttcggctaatcggtcattgcattcatgaacgagagagaatgttaatctacgagtatatgcccaacaaaagtttggacttct |
146 |
Q |
| |
|
|||||||| ||||||||||| | ||| | ||| ||||||||||||| ||| || || ||||||| || |||||||| |||||||| ||||| |||| |
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| T |
19453920 |
cttcagcacacaaatcttgtacaactacttggttgttgcattcatgaagaagaaaggattctaatctatgaatatatgccaaacaaaagcttggatttct |
19454019 |
T |
|
| Q |
147 |
ttttatttggt |
157 |
Q |
| |
|
|||||||||| |
|
|
| T |
19454020 |
atttatttggt |
19454030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 157
Target Start/End: Complemental strand, 19527154 - 19527044
Alignment:
| Q |
47 |
cttcagcatacaaatcttgttcggctaatcggtcattgcattcatgaacgagagagaatgttaatctacgagtatatgcccaacaaaagtttggacttct |
146 |
Q |
| |
|
|||||||| ||||||||||| | ||| | ||| ||||||||||||| ||| || || ||||||| || |||||||| |||||||| ||||| |||| |
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|
| T |
19527154 |
cttcagcacacaaatcttgtacaactacttggttgttgcattcatgaagaagaaaggattctaatctatgaatatatgccaaacaaaagcttggatttct |
19527055 |
T |
|
| Q |
147 |
ttttatttggt |
157 |
Q |
| |
|
|||||||||| |
|
|
| T |
19527054 |
atttatttggt |
19527044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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