View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10174_low_87 (Length: 228)

Name: NF10174_low_87
Description: NF10174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10174_low_87
NF10174_low_87
[»] chr7 (25 HSPs)
chr7 (11-121)||(31098952-31099062)
chr7 (1-119)||(3066470-3066587)
chr7 (1-121)||(29955305-29955425)
chr7 (1-121)||(5091771-5091891)
chr7 (11-121)||(32657526-32657636)
chr7 (12-117)||(3061276-3061381)
chr7 (156-228)||(3293142-3293215)
chr7 (188-228)||(46812890-46812930)
chr7 (156-228)||(3062343-3062416)
chr7 (156-228)||(47078236-47078309)
chr7 (156-227)||(11352960-11353032)
chr7 (156-227)||(3937107-3937180)
chr7 (188-228)||(28036790-28036830)
chr7 (189-228)||(25067270-25067309)
chr7 (189-228)||(37808749-37808788)
chr7 (156-228)||(7817650-7817722)
chr7 (188-228)||(13906442-13906483)
chr7 (195-228)||(35588876-35588909)
chr7 (188-228)||(4713619-4713659)
chr7 (188-228)||(11564939-11564979)
chr7 (188-228)||(16980343-16980383)
chr7 (188-216)||(23170172-23170200)
chr7 (188-228)||(39231713-39231753)
chr7 (188-228)||(39332031-39332071)
chr7 (188-228)||(43573528-43573568)
[»] chr2 (30 HSPs)
chr2 (1-121)||(27999420-27999540)
chr2 (1-121)||(28090154-28090274)
chr2 (1-121)||(28096477-28096597)
chr2 (1-121)||(19820496-19820616)
chr2 (1-121)||(19840717-19840837)
chr2 (2-121)||(1918672-1918791)
chr2 (1-119)||(21590414-21590532)
chr2 (12-121)||(5000613-5000722)
chr2 (12-121)||(5012283-5012392)
chr2 (16-121)||(36439432-36439537)
chr2 (12-118)||(42110909-42111015)
chr2 (1-121)||(205045-205165)
chr2 (156-228)||(26277108-26277181)
chr2 (156-227)||(3012832-3012904)
chr2 (156-228)||(42678762-42678835)
chr2 (156-228)||(10711737-10711810)
chr2 (64-121)||(13900800-13900857)
chr2 (178-227)||(22525980-22526029)
chr2 (178-227)||(32869862-32869911)
chr2 (178-228)||(25881580-25881630)
chr2 (178-228)||(28245764-28245814)
chr2 (178-228)||(36517232-36517282)
chr2 (178-227)||(23352891-23352940)
chr2 (156-228)||(40937049-40937122)
chr2 (156-228)||(42866763-42866836)
chr2 (188-228)||(9377502-9377542)
chr2 (188-228)||(26206893-26206933)
chr2 (188-228)||(34119637-34119677)
chr2 (188-228)||(36802942-36802982)
chr2 (158-228)||(42372494-42372566)
[»] chr6 (9 HSPs)
chr6 (1-118)||(24457242-24457359)
chr6 (1-118)||(29373467-29373584)
chr6 (1-118)||(29370912-29371029)
chr6 (1-59)||(33006545-33006603)
chr6 (156-227)||(5028252-5028324)
chr6 (188-228)||(868937-868977)
chr6 (188-228)||(2075436-2075476)
chr6 (188-228)||(4820297-4820337)
chr6 (188-228)||(6531168-6531208)
[»] chr3 (21 HSPs)
chr3 (1-121)||(857507-857627)
chr3 (17-121)||(35713878-35713982)
chr3 (1-118)||(11824695-11824812)
chr3 (1-118)||(33005285-33005402)
chr3 (1-121)||(31484349-31484469)
chr3 (1-121)||(36090236-36090356)
chr3 (1-121)||(49565220-49565340)
chr3 (156-227)||(3281702-3281774)
chr3 (2-121)||(43508933-43509052)
chr3 (156-228)||(21005161-21005234)
chr3 (156-228)||(49761320-49761393)
chr3 (156-228)||(51465899-51465972)
chr3 (188-228)||(21196170-21196210)
chr3 (188-228)||(30909075-30909115)
chr3 (189-228)||(22371238-22371277)
chr3 (178-228)||(19150304-19150354)
chr3 (156-228)||(54195352-54195426)
chr3 (191-228)||(54027991-54028028)
chr3 (156-228)||(54274177-54274250)
chr3 (188-228)||(8821676-8821716)
chr3 (188-228)||(11633659-11633699)
[»] scaffold0160 (1 HSPs)
scaffold0160 (1-118)||(37172-37289)
[»] chr4 (19 HSPs)
chr4 (1-121)||(42345975-42346095)
chr4 (12-118)||(14147723-14147829)
chr4 (1-121)||(53286503-53286623)
chr4 (156-228)||(17683237-17683310)
chr4 (156-228)||(28657426-28657499)
chr4 (156-227)||(43769724-43769796)
chr4 (156-228)||(31657659-31657732)
chr4 (156-228)||(12138865-12138939)
chr4 (189-227)||(21172327-21172365)
chr4 (178-228)||(28458362-28458412)
chr4 (178-228)||(30170005-30170055)
chr4 (188-228)||(12112673-12112713)
chr4 (188-228)||(13263382-13263422)
chr4 (157-228)||(17367091-17367163)
chr4 (188-228)||(21617229-21617269)
chr4 (188-228)||(30079892-30079932)
chr4 (156-227)||(39312602-39312674)
chr4 (189-225)||(48335601-48335637)
chr4 (156-227)||(52846213-52846285)
[»] chr1 (31 HSPs)
chr1 (1-121)||(2051068-2051188)
chr1 (1-121)||(36870327-36870447)
chr1 (1-121)||(45506304-45506424)
chr1 (1-121)||(48959304-48959424)
chr1 (11-121)||(26210942-26211052)
chr1 (156-228)||(50882095-50882168)
chr1 (156-228)||(18336159-18336232)
chr1 (156-228)||(44632541-44632614)
chr1 (156-228)||(48220129-48220202)
chr1 (5-73)||(13928496-13928564)
chr1 (156-225)||(49241493-49241563)
chr1 (156-224)||(8200088-8200157)
chr1 (178-227)||(35539345-35539394)
chr1 (156-223)||(6143696-6143764)
chr1 (188-228)||(48624922-48624962)
chr1 (178-228)||(8447772-8447822)
chr1 (178-228)||(15015434-15015484)
chr1 (156-228)||(33358143-33358217)
chr1 (178-228)||(47214244-47214294)
chr1 (178-228)||(47721445-47721495)
chr1 (178-228)||(47728437-47728487)
chr1 (178-228)||(52362518-52362568)
chr1 (156-228)||(19969547-19969620)
chr1 (178-227)||(38713606-38713655)
chr1 (156-228)||(50781555-50781628)
chr1 (188-228)||(8411703-8411743)
chr1 (188-228)||(9008271-9008311)
chr1 (188-228)||(21486302-21486342)
chr1 (188-228)||(33054073-33054113)
chr1 (188-228)||(34040485-34040525)
chr1 (188-228)||(50433815-50433855)
[»] chr8 (12 HSPs)
chr8 (1-121)||(18489438-18489558)
chr8 (12-121)||(409401-409510)
chr8 (156-228)||(30439491-30439564)
chr8 (156-228)||(41541870-41541943)
chr8 (156-227)||(42569715-42569787)
chr8 (178-228)||(41159874-41159924)
chr8 (156-228)||(7586147-7586220)
chr8 (188-228)||(1633875-1633915)
chr8 (188-228)||(11017851-11017891)
chr8 (188-228)||(29028946-29028986)
chr8 (188-228)||(34718161-34718201)
chr8 (188-228)||(45529231-45529271)
[»] scaffold0374 (1 HSPs)
scaffold0374 (1-121)||(899-1019)
[»] chr5 (16 HSPs)
chr5 (2-118)||(10038946-10039062)
chr5 (188-228)||(30640836-30640876)
chr5 (156-225)||(3640185-3640255)
chr5 (156-228)||(15953030-15953103)
chr5 (64-121)||(20108395-20108452)
chr5 (158-225)||(1839333-1839401)
chr5 (188-228)||(2688971-2689011)
chr5 (188-228)||(6292167-6292207)
chr5 (178-228)||(20770167-20770217)
chr5 (189-227)||(25585217-25585255)
chr5 (178-228)||(41175691-41175741)
chr5 (156-228)||(34270340-34270413)
chr5 (188-228)||(8267805-8267845)
chr5 (188-228)||(15267830-15267870)
chr5 (188-228)||(18842306-18842346)
chr5 (188-228)||(35098990-35099030)
[»] scaffold0532 (1 HSPs)
scaffold0532 (178-228)||(11000-11050)
[»] scaffold0204 (1 HSPs)
scaffold0204 (189-225)||(23123-23159)


Alignment Details
Target: chr7 (Bit Score: 67; Significance: 6e-30; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 11 - 121
Target Start/End: Complemental strand, 31099062 - 31098952
Alignment:
Q  11 gggtaagggatattcttgtgaaacatatcagtcaacggtatctcaaactatctgtcacccacataaacaaaggtaaaccagacaccaagaccgattctgt 110  Q
    ||||| |||||| ||||||||||| ||||||||||| |||| ||||||| ||||||||||||| |||| ||||||| | || ||||||||||||||||||    
T  31099062 gggtatgggatactcttgtgaaacctatcagtcaaccgtatatcaaactgtctgtcacccacaaaaaccaaggtaatctaggcaccaagaccgattctgt 31098963  T
Q  111 aaaagtcacga 121  Q
    |||||||||||    
T  31098962 aaaagtcacga 31098952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 3066470 - 3066587
Alignment:
Q  1 atcaaaaattgggtaagggatattcttgtgaaacatatcagtcaacggtatctcaaactatctgtcacccacataaacaaaggtaaaccagacaccaaga 100  Q
    ||||||||  ||||| |||||| ||||||||||| |||||||||||||||| ||||||| ||||||||||||| |||  ||||||| ||| |||||||||    
T  3066470 atcaaaaaccgggtaggggatactcttgtgaaacctatcagtcaacggtatatcaaactgtctgtcacccacaaaaatcaaggtaatcca-acaccaaga 3066568  T
Q  101 ccgattctgtaaaagtcac 119  Q
    ||||||| |||||||||||    
T  3066569 ccgattcggtaaaagtcac 3066587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 29955425 - 29955305
Alignment:
Q  1 atcaaaaattgggtaagggatattcttgtgaaacatatcagtcaacggtatctcaaactatctgtcacccacataaacaaaggtaaaccagacaccaaga 100  Q
    ||||||| | ||||| |||||||||||||||||| ||||||||||| |||| ||||||| || |||||||||| |||| ||| ||| |||  ||||||||    
T  29955425 atcaaaagtcgggtaggggatattcttgtgaaacctatcagtcaaccgtatatcaaactgtccgtcacccacaaaaaccaagataatccaagcaccaaga 29955326  T
Q  101 ccgattctgtaaaagtcacga 121  Q
    ||||||| |||||||||||||    
T  29955325 ccgattccgtaaaagtcacga 29955305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 5091891 - 5091771
Alignment:
Q  1 atcaaaaattgggtaagggatattcttgtgaaacatatcagtcaacggtatctcaaactatctgtcacccacataaacaaaggtaaaccagacaccaaga 100  Q
    ||||||||  ||||| |||||| ||||||||||| ||||||||||| |||| ||||||| || |||||| ||| |||| |||||||  ||| ||||||||    
T  5091891 atcaaaaaccgggtaggggatactcttgtgaaacctatcagtcaactgtatatcaaactgtccgtcaccaacaaaaaccaaggtaattcaggcaccaaga 5091792  T
Q  101 ccgattctgtaaaagtcacga 121  Q
     |||||| |||||||||||||    
T  5091791 tcgattccgtaaaagtcacga 5091771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 121
Target Start/End: Complemental strand, 32657636 - 32657526
Alignment:
Q  11 gggtaagggatattcttgtgaaacatatcagtcaacggtatctcaaactatctgtcacccacataaacaaaggtaaaccagacaccaagaccgattctgt 110  Q
    ||||| |||||| ||||||||||| ||||||||||| || | ||||||| || |||||| ||| |||| |||||||   || |||||||| |||||| ||    
T  32657636 gggtaggggatactcttgtgaaacctatcagtcaactgtgtatcaaactgtccgtcaccaacaaaaaccaaggtaatttaggcaccaagatcgattccgt 32657537  T
Q  111 aaaagtcacga 121  Q
    |||||||||||    
T  32657536 aaaagtcacga 32657526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 117
Target Start/End: Original strand, 3061276 - 3061381
Alignment:
Q  12 ggtaagggatattcttgtgaaacatatcagtcaacggtatctcaaactatctgtcacccacataaacaaaggtaaaccagacaccaagaccgattctgta 111  Q
    |||| |||||| ||||||||||| ||||| |||||||||| ||||||| |  |||||||||| || | ||||||| |||| |||||| ||||||||  ||    
T  3061276 ggtaggggatactcttgtgaaacctatcaatcaacggtatatcaaactgttcgtcacccacaaaatccaaggtaatccaggcaccaaaaccgattcctta 3061375  T
Q  112 aaagtc 117  Q
    ||||||    
T  3061376 aaagtc 3061381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 3293142 - 3293215
Alignment:
Q  156 agaaatgatatttgaacattaatttg-tgaccgctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||||||||||||| ||||| ||||  |||||||||| ||||| |||| |||||||||||||||||||    
T  3293142 agaaatgatatttgaacattcatttggtgacaactttctctctcatattcacataattttttactttatctctc 3293215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 46812930 - 46812890
Alignment:
Q  188 ctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  46812930 ctttctctcttatatttacattattttttactttatctctc 46812890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 3062343 - 3062416
Alignment:
Q  156 agaaatgatatttgaacattaattt-gtgaccgctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||||||||||||  |||| |||||  |||||||||||||| | |||||| |||||||||||||||||    
T  3062343 agaaatgatatttgaacatccattttgtgacaactttctctcttatactcacattactttttactttatctctc 3062416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 47078309 - 47078236
Alignment:
Q  156 agaaatgatatttgaacat-taatttgtgaccgctttctctcttatatttacattattttttactttatctctc 228  Q
    ||||||||||||||||||| || ||| ||||  |||||||||| ||| | ||||||||||||||||||||||||    
T  47078309 agaaatgatatttgaacatctattttatgacaactttctctctcatactcacattattttttactttatctctc 47078236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 227
Target Start/End: Complemental strand, 11353032 - 11352960
Alignment:
Q  156 agaaatgatatttgaacattaattt-gtgaccgctttctctcttatatttacattattttttactttatctct 227  Q
    ||||||||||||||||||| ||||| |||||  |||||||||| ||| | |||||| ||||||||||||||||    
T  11353032 agaaatgatatttgaacatcaattttgtgacaactttctctctcatactcacattactttttactttatctct 11352960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 227
Target Start/End: Complemental strand, 3937180 - 3937107
Alignment:
Q  156 agaaatgatatttgaacat-taatttgtgaccgctttctctcttatatttacattat-tttttactttatctct 227  Q
    ||||||||||||||||||| || ||||||||  |||||||||| ||| | ||||||| ||||||||||||||||    
T  3937180 agaaatgatatttgaacatctattttgtgacaactttctctctcatactcacattatctttttactttatctct 3937107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 28036790 - 28036830
Alignment:
Q  188 ctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||||||| | ||||||||||||||||||||||||    
T  28036790 ctttctctcttatactcacattattttttactttatctctc 28036830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 228
Target Start/End: Original strand, 25067270 - 25067309
Alignment:
Q  189 tttctctcttatatttacattattttttactttatctctc 228  Q
    ||||||||||||||| | ||||||||||||||||||||||    
T  25067270 tttctctcttatattcatattattttttactttatctctc 25067309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 228
Target Start/End: Complemental strand, 37808788 - 37808749
Alignment:
Q  189 tttctctcttatatttacattattttttactttatctctc 228  Q
    ||||||||| ||| ||||||||||||||||||||||||||    
T  37808788 tttctctctcatacttacattattttttactttatctctc 37808749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 7817650 - 7817722
Alignment:
Q  156 agaaatgatatttgaacat-taatttgtgaccgctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||||||||||||  | ||||||||  |||||||||| ||| | |||||| |||||||||||||||||    
T  7817650 agaaatgatatttgaacatccattttgtgacaactttctctctcatactcacatta-tttttactttatctctc 7817722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 13906483 - 13906442
Alignment:
Q  188 ctttctctcttatatttacattatt-ttttactttatctctc 228  Q
    |||||||||||||| |||||||||| ||||||||||||||||    
T  13906483 ctttctctcttatacttacattatttttttactttatctctc 13906442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 228
Target Start/End: Complemental strand, 35588909 - 35588876
Alignment:
Q  195 tcttatatttacattattttttactttatctctc 228  Q
    ||||||||| ||||||||||||||||||||||||    
T  35588909 tcttatattcacattattttttactttatctctc 35588876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 4713619 - 4713659
Alignment:
Q  188 ctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||| | ||| ||||||||||||||||||||||||    
T  4713619 ctttctctctcaaattcacattattttttactttatctctc 4713659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 11564939 - 11564979
Alignment:
Q  188 ctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||| ||| | ||||||||||||||||||||||||    
T  11564939 ctttctctctcatactcacattattttttactttatctctc 11564979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 16980343 - 16980383
Alignment:
Q  188 ctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||||||| | |||||| |||||||||||||||||    
T  16980343 ctttctctcttatactcacattactttttactttatctctc 16980383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 216
Target Start/End: Original strand, 23170172 - 23170200
Alignment:
Q  188 ctttctctcttatatttacattatttttt 216  Q
    |||||||||||||||||||||||||||||    
T  23170172 ctttctctcttatatttacattatttttt 23170200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 39231753 - 39231713
Alignment:
Q  188 ctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||| ||| | ||||||||||||||||||||||||    
T  39231753 ctttctctctcatactcacattattttttactttatctctc 39231713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 39332031 - 39332071
Alignment:
Q  188 ctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||||||| | |||||| |||||||||||||||||    
T  39332031 ctttctctcttatactcacattactttttactttatctctc 39332071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 43573568 - 43573528
Alignment:
Q  188 ctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||| ||||| |||||| |||||||||||||||||    
T  43573568 ctttctctctcatattcacattactttttactttatctctc 43573528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 27999420 - 27999540
Alignment:
Q  1 atcaaaaattgggtaagggatattcttgtgaaacatatcagtcaacggtatctcaaactatctgtcacccacataaacaaaggtaaaccagacaccaaga 100  Q
    |||||||||  |||| |||||| ||||||||| | ||||||||||| |||| ||||||| || |||||||||| |||| ||||||| |||| ||||||||    
T  27999420 atcaaaaatcaggtaggggatactcttgtgaagcctatcagtcaaccgtatatcaaactgtccgtcacccacaaaaaccaaggtaatccaggcaccaaga 27999519  T
Q  101 ccgattctgtaaaagtcacga 121  Q
    |||||||||||||||||||||    
T  27999520 ccgattctgtaaaagtcacga 27999540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 28090154 - 28090274
Alignment:
Q  1 atcaaaaattgggtaagggatattcttgtgaaacatatcagtcaacggtatctcaaactatctgtcacccacataaacaaaggtaaaccagacaccaaga 100  Q
    |||||||||  |||| |||||| ||||||||| | ||||||||||| |||| ||||||| || |||||||||| |||| ||||||| |||| ||||||||    
T  28090154 atcaaaaatcaggtaggggatactcttgtgaagcctatcagtcaaccgtatatcaaactgtccgtcacccacaaaaaccaaggtaatccaggcaccaaga 28090253  T
Q  101 ccgattctgtaaaagtcacga 121  Q
    |||||||||||||||||||||    
T  28090254 ccgattctgtaaaagtcacga 28090274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 28096477 - 28096597
Alignment:
Q  1 atcaaaaattgggtaagggatattcttgtgaaacatatcagtcaacggtatctcaaactatctgtcacccacataaacaaaggtaaaccagacaccaaga 100  Q
    |||||||||  |||| |||||| ||||||||| | ||||||||||| |||| ||||||| || |||||||||| |||| ||||||| |||| ||||||||    
T  28096477 atcaaaaatcaggtaggggatactcttgtgaagcctatcagtcaaccgtatatcaaactgtccgtcacccacaaaaaccaaggtaatccaggcaccaaga 28096576  T
Q  101 ccgattctgtaaaagtcacga 121  Q
    |||||||||||||||||||||    
T  28096577 ccgattctgtaaaagtcacga 28096597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 19820616 - 19820496
Alignment:
Q  1 atcaaaaattgggtaagggatattcttgtgaaacatatcagtcaacggtatctcaaactatctgtcacccacataaacaaaggtaaaccagacaccaaga 100  Q
    ||||||||  ||||| |||||| ||||||||||| ||||||||||| |||| ||||||| || |||||| ||| |||| ||||||| |||| ||||||||    
T  19820616 atcaaaaaccgggtaggggatactcttgtgaaacctatcagtcaactgtatatcaaactgtccgtcaccaacaaaaaccaaggtaatccaggcaccaaga 19820517  T
Q  101 ccgattctgtaaaagtcacga 121  Q
     |||||| |||||||||||||    
T  19820516 tcgattccgtaaaagtcacga 19820496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 19840837 - 19840717
Alignment:
Q  1 atcaaaaattgggtaagggatattcttgtgaaacatatcagtcaacggtatctcaaactatctgtcacccacataaacaaaggtaaaccagacaccaaga 100  Q
    ||||||||  ||||| |||||| ||||||||||| ||||||||||| |||| ||||||| || |||||| ||| |||| ||||||| |||| ||||||||    
T  19840837 atcaaaaaccgggtaggggatactcttgtgaaacctatcagtcaactgtatatcaaactgtccgtcaccaacaaaaaccaaggtaatccaggcaccaaga 19840738  T
Q  101 ccgattctgtaaaagtcacga 121  Q
     |||||| |||||||||||||    
T  19840737 tcgattccgtaaaagtcacga 19840717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 2 - 121
Target Start/End: Original strand, 1918672 - 1918791
Alignment:
Q  2 tcaaaaattgggtaagggatattcttgtgaaacatatcagtcaacggtatctcaaactatctgtcacccacataaacaaaggtaaaccagacaccaagac 101  Q
    |||||||| |||||  ||||| ||||||||||| | ||||||||| |||| ||||| | || |||||||||| |||| ||||||| |||| |||||||||    
T  1918672 tcaaaaatcgggtagaggatactcttgtgaaacctgtcagtcaaccgtatatcaaattgtccgtcacccacaaaaaccaaggtaatccaggcaccaagac 1918771  T
Q  102 cgattctgtaaaagtcacga 121  Q
    |||||| |||||||||||||    
T  1918772 cgattccgtaaaagtcacga 1918791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 21590414 - 21590532
Alignment:
Q  1 atcaaaaattgggtaagggatattcttgtgaaacatatcagtcaacggtatctcaaactatctgtcacccacataaacaaaggtaaaccagacaccaaga 100  Q
    ||||||||  ||||| |||||| ||||||||||| ||||||||||| |||| ||||||| || |||||| ||| |||| |||||||  ||| ||||||||    
T  21590414 atcaaaaaccgggtaggggatactcttgtgaaacctatcagtcaactgtatatcaaactgtccgtcaccaacaaaaaccaaggtaattcaggcaccaaga 21590513  T
Q  101 ccgattctgtaaaagtcac 119  Q
     ||||||||||||||||||    
T  21590514 tcgattctgtaaaagtcac 21590532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 12 - 121
Target Start/End: Original strand, 5000613 - 5000722
Alignment:
Q  12 ggtaagggatattcttgtgaaacatatcagtcaacggtatctcaaactatctgtcacccacataaacaaaggtaaaccagacaccaagaccgattctgta 111  Q
    |||| |||||| ||||||||||| ||||||||||| |||| ||||| | || |||||| ||| |||| ||||||| |||| |||||||| |||||| |||    
T  5000613 ggtaggggatactcttgtgaaacctatcagtcaactgtatatcaaattgtccgtcaccaacaaaaaccaaggtaatccaggcaccaagatcgattccgta 5000712  T
Q  112 aaagtcacga 121  Q
    ||||||||||    
T  5000713 aaagtcacga 5000722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 12 - 121
Target Start/End: Original strand, 5012283 - 5012392
Alignment:
Q  12 ggtaagggatattcttgtgaaacatatcagtcaacggtatctcaaactatctgtcacccacataaacaaaggtaaaccagacaccaagaccgattctgta 111  Q
    |||| |||||| ||||||||||| ||||||||||| |||| ||||| | || |||||| ||| |||| ||||||| |||| |||||||| |||||| |||    
T  5012283 ggtaggggatactcttgtgaaacctatcagtcaactgtatatcaaattgtccgtcaccaacaaaaaccaaggtaatccaggcaccaagatcgattccgta 5012382  T
Q  112 aaagtcacga 121  Q
    ||||||||||    
T  5012383 aaagtcacga 5012392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 36439432 - 36439537
Alignment:
Q  16 agggatattcttgtgaaacatatcagtcaacggtatctcaaactatctgtcacccacataaacaaaggtaaaccagacaccaagaccgattctgtaaaag 115  Q
    ||||||| ||||||||||| |||||||||||  ||| ||||||| ||||||||| ||| |||| |||||||  ||| |||||||| |||||| |||||||    
T  36439432 agggatactcttgtgaaacctatcagtcaactatatatcaaactgtctgtcaccaacaaaaaccaaggtaattcaggcaccaagatcgattccgtaaaag 36439531  T
Q  116 tcacga 121  Q
    ||||||    
T  36439532 tcacga 36439537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 118
Target Start/End: Original strand, 42110909 - 42111015
Alignment:
Q  12 ggtaagggatattcttgtgaaacatatcagtcaacggtatctcaaactatctgtcacccacataaacaaaggtaaaccagacaccaagaccgattctgta 111  Q
    |||| |||||| || |||||||| ||||||||||| |||| ||||||| || |||||| ||| |||| ||||||| |||| |||||||| |||||| |||    
T  42110909 ggtaggggatactcgtgtgaaacctatcagtcaactgtatatcaaactgtccgtcaccaacaaaaaccaaggtaatccaggcaccaagatcgattccgta 42111008  T
Q  112 aaagtca 118  Q
    |||||||    
T  42111009 aaagtca 42111015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 205165 - 205045
Alignment:
Q  1 atcaaaaattgggtaagggatattcttgtgaaacatatcagtcaacggtatctcaaactatctgtcacccacataaacaaaggtaaaccagacaccaaga 100  Q
    ||||||||  ||||| |||||| ||||||||||| ||||||||||| || | || |||| || |||||| ||| |||| |||||||  ||| ||||||||    
T  205165 atcaaaaaccgggtaggggatactcttgtgaaacctatcagtcaactgtgtatctaactgtccgtcaccaacaaaaaccaaggtaattcaggcaccaaga 205066  T
Q  101 ccgattctgtaaaagtcacga 121  Q
     |||||| |||||||||||||    
T  205065 tcgattccgtaaaagtcacga 205045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 26277108 - 26277181
Alignment:
Q  156 agaaatgatatttgaacattaattt-gtgaccgctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||||||||||||  |||| |||||  |||||||||||||| | ||||||||||||||||||||||||    
T  26277108 agaaatgatatttgaacatccatttagtgacaactttctctcttatactcacattattttttactttatctctc 26277181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 227
Target Start/End: Complemental strand, 3012904 - 3012832
Alignment:
Q  156 agaaatgatatttgaacattaattt-gtgaccgctttctctcttatatttacattattttttactttatctct 227  Q
    |||||||||||||||||||  |||| |||||  |||||||||| ||| |||||||||||||||||||||||||    
T  3012904 agaaatgatatttgaacatccattttgtgacaactttctctctcatacttacattattttttactttatctct 3012832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 42678762 - 42678835
Alignment:
Q  156 agaaatgatatttgaacattaattt-gtgaccgctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||||||||||||  |||| |||||  |||||||||| ||| | ||||||||||||||||||||||||    
T  42678762 agaaatgatatttgaacatccatttagtgacaactttctctctcatactcacattattttttactttatctctc 42678835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 10711737 - 10711810
Alignment:
Q  156 agaaatgatatttgaacat-taatttgtgaccgctttctctcttatatttacattattttttactttatctctc 228  Q
    ||||||||||||||||||| || ||||||||   ||||||||| ||| | |||||| |||||||||||||||||    
T  10711737 agaaatgatatttgaacatctattttgtgacaattttctctctcatactcacattactttttactttatctctc 10711810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 121
Target Start/End: Complemental strand, 13900857 - 13900800
Alignment:
Q  64 gtcacccacataaacaaaggtaaaccagacaccaagaccgattctgtaaaagtcacga 121  Q
    |||||||||| |||| ||||||| |||| |||||||| |||||| |||||||||||||    
T  13900857 gtcacccacaaaaaccaaggtaatccaggcaccaagatcgattccgtaaaagtcacga 13900800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 22526029 - 22525980
Alignment:
Q  178 tttgtgaccgctttctctcttatatttacattattttttactttatctct 227  Q
    ||||||||  |||||||| ||||||| |||||||||||||||||||||||    
T  22526029 tttgtgacaactttctcttttatattcacattattttttactttatctct 22525980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 32869862 - 32869911
Alignment:
Q  178 tttgtgaccgctttctctcttatatttacattattttttactttatctct 227  Q
    ||||||||  |||||||| | |||||||||||||||||||||||||||||    
T  32869862 tttgtgacaactttctctttcatatttacattattttttactttatctct 32869911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 228
Target Start/End: Original strand, 25881580 - 25881630
Alignment:
Q  178 tttgtgaccgctttctctcttatatttacattattttttactttatctctc 228  Q
    ||||||||  |||||||||| ||| | ||||||||||||||||||||||||    
T  25881580 tttgtgacaactttctctctcatactcacattattttttactttatctctc 25881630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 228
Target Start/End: Original strand, 28245764 - 28245814
Alignment:
Q  178 tttgtgaccgctttctctcttatatttacattattttttactttatctctc 228  Q
    ||||||||  |||||||||| ||| | ||||||||||||||||||||||||    
T  28245764 tttgtgacaactttctctctcatactcacattattttttactttatctctc 28245814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 228
Target Start/End: Original strand, 36517232 - 36517282
Alignment:
Q  178 tttgtgaccgctttctctcttatatttacattattttttactttatctctc 228  Q
    ||||||||  |||||||| ||||||| | ||||||||||||||||||||||    
T  36517232 tttgtgacaactttctcttttatattcatattattttttactttatctctc 36517282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 23352940 - 23352891
Alignment:
Q  178 tttgtgaccgctttctctcttatatttacattattttttactttatctct 227  Q
    ||||||||  |||||||||| ||| | |||||||||||||||||||||||    
T  23352940 tttgtgacaactttctctctcatactcacattattttttactttatctct 23352891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 40937122 - 40937049
Alignment:
Q  156 agaaatgatatttgaacattaattt-gtgaccgctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||| ||||||||||  |||| ||||   |||||||||| ||| | ||||||||||||||||||||||||    
T  40937122 agaaatgacatttgaacatccattttgtgataactttctctctcatactcacattattttttactttatctctc 40937049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 42866763 - 42866836
Alignment:
Q  156 agaaatgatatttgaacattaattt-gtgaccgctttctctcttatatttacattattttttactttatctctc 228  Q
    ||||||||||||||||| |  |||| |||||  |||| ||||| ||| | ||||||||||||||||||||||||    
T  42866763 agaaatgatatttgaacgtccattttgtgacaactttttctctcatactcacattattttttactttatctctc 42866836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 9377502 - 9377542
Alignment:
Q  188 ctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||| ||||| |||||| |||||||||||||||||    
T  9377502 ctttctctctcatattcacattactttttactttatctctc 9377542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 26206893 - 26206933
Alignment:
Q  188 ctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||| ||| | ||||||||||||||||||||||||    
T  26206893 ctttctctctcatactcacattattttttactttatctctc 26206933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 34119677 - 34119637
Alignment:
Q  188 ctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||| ||| | ||||||||||||||||||||||||    
T  34119677 ctttctctctcatactcacattattttttactttatctctc 34119637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 36802942 - 36802982
Alignment:
Q  188 ctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||| ||| | ||||||||||||||||||||||||    
T  36802942 ctttctctctcatactcacattattttttactttatctctc 36802982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 228
Target Start/End: Original strand, 42372494 - 42372566
Alignment:
Q  158 aaatgatatttgaacattaattt-gtgaccgctttctctcttatatttacattatttt-ttactttatctctc 228  Q
    |||||||||||||||||  |||| |||||  |||||||||| ||| | |||||||||| ||||||||||||||    
T  42372494 aaatgatatttgaacatctatttagtgacaactttctctctcatactcacattatttttttactttatctctc 42372566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 6e-27; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 24457359 - 24457242
Alignment:
Q  1 atcaaaaattgggtaagggatattcttgtgaaacatatcagtcaacggtatctcaaactatctgtcacccacataaacaaaggtaaaccagacaccaaga 100  Q
    ||||||||  ||||| |||||| ||||||||||| ||||||||||| |||| |||||||||| |||||| ||| |||||||||||| |||| ||||||||    
T  24457359 atcaaaaaccgggtaggggatactcttgtgaaacctatcagtcaactgtatatcaaactatccgtcaccaacaaaaacaaaggtaatccaggcaccaaga 24457260  T
Q  101 ccgattctgtaaaagtca 118  Q
     |||||| ||||||||||    
T  24457259 tcgattccgtaaaagtca 24457242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 29373467 - 29373584
Alignment:
Q  1 atcaaaaattgggtaagggatattcttgtgaaacatatcagtcaacggtatctcaaactatctgtcacccacataaacaaaggtaaaccagacaccaaga 100  Q
    |||||||| |||||| |||||| ||||||||||| ||||||||||| |||| ||||| | ||||||||| ||| |||| ||||||| |||| ||||||||    
T  29373467 atcaaaaactgggtatgggatactcttgtgaaacctatcagtcaactgtatatcaaaatgtctgtcaccaacaaaaaccaaggtaatccaggcaccaaga 29373566  T
Q  101 ccgattctgtaaaagtca 118  Q
     |||||| ||||||||||    
T  29373567 tcgattccgtaaaagtca 29373584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 29370912 - 29371029
Alignment:
Q  1 atcaaaaattgggtaagggatattcttgtgaaacatatcagtcaacggtatctcaaactatctgtcacccacataaacaaaggtaaaccagacaccaaga 100  Q
    ||||||||  ||||| |||||| ||||||||||| ||||||||||| |||| ||||||| ||||||||| ||| |||| ||||||| |||| ||||||||    
T  29370912 atcaaaaaccgggtaggggatactcttgtgaaacctatcagtcaactgtatatcaaactgtctgtcaccaacaaaaaccaaggtaatccaggcaccaaga 29371011  T
Q  101 ccgattctgtaaaagtca 118  Q
     | |||| ||||||||||    
T  29371012 tcaattccgtaaaagtca 29371029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 33006545 - 33006603
Alignment:
Q  1 atcaaaaattgggtaagggatattcttgtgaaacatatcagtcaacggtatctcaaact 59  Q
    ||||||||| |||||||||||| ||||||||||| ||||||||||| |||| |||||||    
T  33006545 atcaaaaatcgggtaagggatactcttgtgaaacctatcagtcaactgtatatcaaact 33006603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 227
Target Start/End: Complemental strand, 5028324 - 5028252
Alignment:
Q  156 agaaatgatatttgaacattaattt-gtgaccgctttctctcttatatttacattattttttactttatctct 227  Q
    ||||||||||||| |||||  |||| |||||  |||||||||||||| | |||||| ||||||||||||||||    
T  5028324 agaaatgatatttaaacatccattttgtgacaactttctctcttatactcacattactttttactttatctct 5028252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 868977 - 868937
Alignment:
Q  188 ctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||| ||||| | ||||||||||||||||||||||    
T  868977 ctttctctctcatattcatattattttttactttatctctc 868937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 2075476 - 2075436
Alignment:
Q  188 ctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||| ||| | ||||||||||||||||||||||||    
T  2075476 ctttctctctcatactcacattattttttactttatctctc 2075436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 4820297 - 4820337
Alignment:
Q  188 ctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||| ||| | ||||||||||||||||||||||||    
T  4820297 ctttctctctcatactcacattattttttactttatctctc 4820337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 6531208 - 6531168
Alignment:
Q  188 ctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||| ||| | ||||||||||||||||||||||||    
T  6531208 ctttctctctcatactcacattattttttactttatctctc 6531168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 2e-26; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 857627 - 857507
Alignment:
Q  1 atcaaaaattgggtaagggatattcttgtgaaacatatcagtcaacggtatctcaaactatctgtcacccacataaacaaaggtaaaccagacaccaaga 100  Q
    |||||||| |||||| || ||| ||||||||||| ||||||||||| |||| ||||||| || |||||||||| |||| ||||||| |||| ||||||||    
T  857627 atcaaaaactgggtagggtatactcttgtgaaacctatcagtcaaccgtatatcaaactgtccgtcacccacaaaaaccaaggtaatccaggcaccaaga 857528  T
Q  101 ccgattctgtaaaagtcacga 121  Q
    ||||||  |||||||||||||    
T  857527 ccgatttcgtaaaagtcacga 857507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 121
Target Start/End: Complemental strand, 35713982 - 35713878
Alignment:
Q  17 gggatattcttgtgaaacatatcagtcaacggtatctcaaactatctgtcacccacataaacaaaggtaaaccagacaccaagaccgattctgtaaaagt 116  Q
    |||||| ||||||||||| ||||||||||| |||| ||||||| || |||||| ||| ||||||||||||  |||||||||||| |||||| ||||||||    
T  35713982 gggatactcttgtgaaacctatcagtcaactgtatatcaaactgtccgtcaccaacaaaaacaaaggtaattcagacaccaagatcgattccgtaaaagt 35713883  T
Q  117 cacga 121  Q
    |||||    
T  35713882 cacga 35713878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 11824812 - 11824695
Alignment:
Q  1 atcaaaaattgggtaagggatattcttgtgaaacatatcagtcaacggtatctcaaactatctgtcacccacataaacaaaggtaaaccagacaccaaga 100  Q
    ||||||||  ||||| |||||| ||||||||||| ||||||||||| |||| ||||||| || |||||| ||| |||| ||||||| |||| ||||||||    
T  11824812 atcaaaaaccgggtaggggatactcttgtgaaacctatcagtcaactgtatatcaaactgtccgtcaccaacaaaaaccaaggtaatccaggcaccaaga 11824713  T
Q  101 ccgattctgtaaaagtca 118  Q
     |||||| ||||||||||    
T  11824712 tcgattccgtaaaagtca 11824695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 33005285 - 33005402
Alignment:
Q  1 atcaaaaattgggtaagggatattcttgtgaaacatatcagtcaacggtatctcaaactatctgtcacccacataaacaaaggtaaaccagacaccaaga 100  Q
    ||||||||  ||||| |||||| ||||||||||| ||||||||||| |||| ||||||| || |||||| ||| |||| ||||||| |||| ||||||||    
T  33005285 atcaaaaaccgggtaggggatactcttgtgaaacctatcagtcaactgtatatcaaactgtccgtcaccaacaaaaaccaaggtaatccaggcaccaaga 33005384  T
Q  101 ccgattctgtaaaagtca 118  Q
     |||||| ||||||||||    
T  33005385 tcgattccgtaaaagtca 33005402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 31484469 - 31484349
Alignment:
Q  1 atcaaaaattgggtaagggatattcttgtgaaacatatcagtcaacggtatctcaaactatctgtcacccacataaacaaaggtaaaccagacaccaaga 100  Q
    ||||||||  ||||| |||||| ||||||||||| ||||||||||| |||| ||||| | || |||||||||| |||| ||||||| |||| ||||||||    
T  31484469 atcaaaaaccgggtaggggatactcttgtgaaacctatcagtcaactgtatatcaaattgtccgtcacccacaaaaaccaaggtaatccaggcaccaaga 31484370  T
Q  101 ccgattctgtaaaagtcacga 121  Q
      ||||| |||||||||||||    
T  31484369 ttgattccgtaaaagtcacga 31484349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 36090236 - 36090356
Alignment:
Q  1 atcaaaaattgggtaagggatattcttgtgaaacatatcagtcaacggtatctcaaactatctgtcacccacataaacaaaggtaaaccagacaccaaga 100  Q
    ||||||||  ||||| |||||| ||||||||||| ||||||||||| |||| ||||||| || |||||| ||| |||| |||||||  ||| ||||||||    
T  36090236 atcaaaaaccgggtaggggatactcttgtgaaacctatcagtcaactgtatatcaaactgtccgtcaccaacaaaaaccaaggtaattcaggcaccaaga 36090335  T
Q  101 ccgattctgtaaaagtcacga 121  Q
     ||||||| ||||||||||||    
T  36090336 tcgattctataaaagtcacga 36090356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 49565220 - 49565340
Alignment:
Q  1 atcaaaaattgggtaagggatattcttgtgaaacatatcagtcaacggtatctcaaactatctgtcacccacataaacaaaggtaaaccagacaccaaga 100  Q
    ||||||||  ||||| |||||| ||||||||||| |||||| |||| |||| ||||||| || |||||| ||| |||| |||||||  ||| ||||||||    
T  49565220 atcaaaaaccgggtaggggatactcttgtgaaacctatcagacaactgtatatcaaactgtccgtcaccaacaaaaaccaaggtaattcaggcaccaaga 49565319  T
Q  101 ccgattctgtaaaagtcacga 121  Q
     ||||| ||||||||||||||    
T  49565320 tcgattgtgtaaaagtcacga 49565340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 227
Target Start/End: Complemental strand, 3281774 - 3281702
Alignment:
Q  156 agaaatgatatttgaacattaattt-gtgaccgctttctctcttatatttacattattttttactttatctct 227  Q
    |||||||||||||||||||| |||| |||||  |||||||||||||| | |||||| ||||||||||||||||    
T  3281774 agaaatgatatttgaacatttattttgtgacaactttctctcttatactcacattactttttactttatctct 3281702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 2 - 121
Target Start/End: Original strand, 43508933 - 43509052
Alignment:
Q  2 tcaaaaattgggtaagggatattcttgtgaaacatatcagtcaacggtatctcaaactatctgtcacccacataaacaaaggtaaaccagacaccaagac 101  Q
    |||||||  ||||| |||||| ||||||||||| ||||||||||| |||| ||||||| || ||| |  ||| |||| ||||||| |||| ||||||||     
T  43508933 tcaaaaaccgggtaggggatactcttgtgaaacctatcagtcaactgtatatcaaactgtccgtcgctaacaaaaaccaaggtaatccaggcaccaagat 43509032  T
Q  102 cgattctgtaaaagtcacga 121  Q
    ||||||  ||||| ||||||    
T  43509033 cgattccataaaattcacga 43509052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 21005234 - 21005161
Alignment:
Q  156 agaaatgatatttgaacat-taatttgtgaccgctttctctcttatatttacattattttttactttatctctc 228  Q
    ||||||||||||||||||| || ||||||||  |||||||||||||| | || ||| |||||||||||||||||    
T  21005234 agaaatgatatttgaacatctattttgtgacaactttctctcttatactcacgttactttttactttatctctc 21005161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 49761320 - 49761393
Alignment:
Q  156 agaaatgatatttgaacattaattt-gtgaccgctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||||||||||||  |||| |||||  |||||||||| ||| | ||||||||||||||||||||||||    
T  49761320 agaaatgatatttgaacatccattttgtgacaactttctctctcatactcacattattttttactttatctctc 49761393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 51465972 - 51465899
Alignment:
Q  156 agaaatgatatttgaacat-taatttgtgaccgctttctctcttatatttacattattttttactttatctctc 228  Q
    ||||||||||||||||||| || ||||||||| |||||||||| ||| | | |||| |||||||||||||||||    
T  51465972 agaaatgatatttgaacatctattttgtgaccactttctctctcatactcatattactttttactttatctctc 51465899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 21196170 - 21196210
Alignment:
Q  188 ctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||| ||| ||||||||||||||||||||||||||    
T  21196170 ctttctctctcatacttacattattttttactttatctctc 21196210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 30909075 - 30909115
Alignment:
Q  188 ctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||||||||| |||||| |||||||||||||||||    
T  30909075 ctttctctcttatattcacattactttttactttatctctc 30909115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 228
Target Start/End: Original strand, 22371238 - 22371277
Alignment:
Q  189 tttctctcttatatttacattattttttactttatctctc 228  Q
    ||||||||| ||| ||||||||||||||||||||||||||    
T  22371238 tttctctctcatacttacattattttttactttatctctc 22371277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 228
Target Start/End: Complemental strand, 19150354 - 19150304
Alignment:
Q  178 tttgtgaccgctttctctcttatatttacattattttttactttatctctc 228  Q
    ||||||||  |||||||||| ||||||||||||| ||||||||| ||||||    
T  19150354 tttgtgacaactttctctctcatatttacattatattttactttctctctc 19150304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 54195352 - 54195426
Alignment:
Q  156 agaaatgatatttgaacattaattt-gtgaccgctttctctcttatatttacatta-ttttttactttatctctc 228  Q
    |||||||||||||||||||  |||| |||||  |||||||| ||||| | |||||| ||||||||||||||||||    
T  54195352 agaaatgatatttgaacatccatttagtgacaactttctcttttatactcacattatttttttactttatctctc 54195426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 228
Target Start/End: Original strand, 54027991 - 54028028
Alignment:
Q  191 tctctcttatatttacattattttttactttatctctc 228  Q
    ||||||| ||| ||||||||||||||||||||||||||    
T  54027991 tctctctcatacttacattattttttactttatctctc 54028028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 54274250 - 54274177
Alignment:
Q  156 agaaatgatatttgaacattaattt-gtgaccgctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||||||||||||| |||| ||||    ||| ||||||||||||| ||||||||||| ||||| ||||    
T  54274250 agaaatgatatttgaacatttattttgtgataattttttctcttatatttatattattttttattttatttctc 54274177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 8821676 - 8821716
Alignment:
Q  188 ctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||| ||| | ||||||||||||||||||||||||    
T  8821676 ctttctctctcatactcacattattttttactttatctctc 8821716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 11633659 - 11633699
Alignment:
Q  188 ctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||| ||||| |||||| |||||||||||||||||    
T  11633659 ctttctctctcatattcacattactttttactttatctctc 11633699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 37289 - 37172
Alignment:
Q  1 atcaaaaattgggtaagggatattcttgtgaaacatatcagtcaacggtatctcaaactatctgtcacccacataaacaaaggtaaaccagacaccaaga 100  Q
    ||||||||  ||||| |||||| ||||||||||| ||||||||||| |||| ||||||||||| ||||||||| |||| ||||||| | || ||||||||    
T  37289 atcaaaaaccgggtaggggatactcttgtgaaacctatcagtcaaccgtatatcaaactatctatcacccacaaaaaccaaggtaatctaggcaccaaga 37190  T
Q  101 ccgattctgtaaaagtca 118  Q
    ||||||  ||||||||||    
T  37189 ccgattgagtaaaagtca 37172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 42346095 - 42345975
Alignment:
Q  1 atcaaaaattgggtaagggatattcttgtgaaacatatcagtcaacggtatctcaaactatctgtcacccacataaacaaaggtaaaccagacaccaaga 100  Q
    ||||||||  ||||| |||||| ||||||||||| ||||||||||| |||| ||||||| || |||||| ||| |||| ||||||| |||| ||||||||    
T  42346095 atcaaaaaccgggtaggggatactcttgtgaaacctatcagtcaactgtatatcaaactgtccgtcaccaacaaaaaccaaggtaatccaggcaccaaga 42345996  T
Q  101 ccgattctgtaaaagtcacga 121  Q
     |||||| |||||||||||||    
T  42345995 tcgattccgtaaaagtcacga 42345975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 118
Target Start/End: Original strand, 14147723 - 14147829
Alignment:
Q  12 ggtaagggatattcttgtgaaacatatcagtcaacggtatctcaaactatctgtcacccacataaacaaaggtaaaccagacaccaagaccgattctgta 111  Q
    |||| |||||| ||||||||||| ||||||||||  |||| ||||||| ||  ||||||||| |||| ||||||| |||| |||||||| |||||| |||    
T  14147723 ggtaggggatactcttgtgaaacctatcagtcaagtgtatatcaaactgtccatcacccacaaaaaccaaggtaatccaggcaccaagatcgattccgta 14147822  T
Q  112 aaagtca 118  Q
    |||||||    
T  14147823 aaagtca 14147829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 53286623 - 53286503
Alignment:
Q  1 atcaaaaattgggtaagggatattcttgtgaaacatatcagtcaacggtatctcaaactatctgtcacccacataaacaaaggtaaaccagacaccaaga 100  Q
    |||||||| |||||| |||||| ||||||||||  ||||||||||| | || ||||||| ||  ||||| ||| |||| ||||||| |||| ||||||||    
T  53286623 atcaaaaactgggtaggggatactcttgtgaaagctatcagtcaactgcatatcaaactgtccttcaccaacaaaaactaaggtaatccaggcaccaaga 53286524  T
Q  101 ccgattctgtaaaagtcacga 121  Q
     |||||| |||||| ||||||    
T  53286523 tcgattccgtaaaattcacga 53286503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 17683237 - 17683310
Alignment:
Q  156 agaaatgatatttgaacattaatttg-tgaccgctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||||||||||||| ||||  ||||  |||||||||||||| | |||||| |||||||||||||||||    
T  17683237 agaaatgatatttgaacattcattttatgacaactttctctcttatactcacattactttttactttatctctc 17683310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 28657499 - 28657426
Alignment:
Q  156 agaaatgatatttgaacattaattt-gtgaccgctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||||||||||||  |||| |||||  |||||||||| ||| | ||||||||||||||||||||||||    
T  28657499 agaaatgatatttgaacatccattttgtgacaactttctctctcatactcacattattttttactttatctctc 28657426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 227
Target Start/End: Original strand, 43769724 - 43769796
Alignment:
Q  156 agaaatgatatttgaacattaattt-gtgaccgctttctctcttatatttacattattttttactttatctct 227  Q
    |||||||||||||||||||  |||| |||||  |||||||||| ||| | |||||||||||||||||||||||    
T  43769724 agaaatgatatttgaacatccattttgtgacaactttctctctcatactcacattattttttactttatctct 43769796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 31657659 - 31657732
Alignment:
Q  156 agaaatgatatttgaacattaattt-gtgaccgctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||||||||||||  |||| |||||  |||||||||| ||| | |||||| |||||||||||||||||    
T  31657659 agaaatgatatttgaacatccattttgtgacaactttctctctcatactcacattactttttactttatctctc 31657732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 12138865 - 12138939
Alignment:
Q  156 agaaatgatatttgaacattaa-tttgtgaccgctttctctcttatatttacatta-ttttttactttatctctc 228  Q
    ||||||||||||||||||| || ||||||||  | ||||||||| || | |||||| ||||||||||||||||||    
T  12138865 agaaatgatatttgaacatgaattttgtgacaacgttctctcttctactcacattatttttttactttatctctc 12138939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 227
Target Start/End: Original strand, 21172327 - 21172365
Alignment:
Q  189 tttctctcttatatttacattattttttactttatctct 227  Q
    ||||||||||||| |||| ||||||||||||||||||||    
T  21172327 tttctctcttatacttacgttattttttactttatctct 21172365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 228
Target Start/End: Complemental strand, 28458412 - 28458362
Alignment:
Q  178 tttgtgaccgctttctctcttatatttacattattttttactttatctctc 228  Q
    ||||||||  |||||||||| ||| | ||||||||||||||||||||||||    
T  28458412 tttgtgacaactttctctctcatactcacattattttttactttatctctc 28458362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 228
Target Start/End: Complemental strand, 30170055 - 30170005
Alignment:
Q  178 tttgtgaccgctttctctcttatatttacattattttttactttatctctc 228  Q
    ||||||||  |||||||||| ||| | ||||||||||||||||||||||||    
T  30170055 tttgtgacaactttctctctcatactcacattattttttactttatctctc 30170005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 12112673 - 12112713
Alignment:
Q  188 ctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||| ||||| | ||||||||||||||||||||||    
T  12112673 ctttctctctcatattcatattattttttactttatctctc 12112713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 13263422 - 13263382
Alignment:
Q  188 ctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||||||| | || |||||||||||||||||||||    
T  13263422 ctttctctcttatactcactttattttttactttatctctc 13263382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 17367091 - 17367163
Alignment:
Q  157 gaaatgatatttgaacattaatttgtgaccgctttctctcttatatttacattat-tttttactttatctctc 228  Q
    ||||||||||||| |||| | ||||||||  |||||||||||||| |  |||||| |||||||||| ||||||    
T  17367091 gaaatgatatttgtacatcattttgtgacaactttctctcttatactcgcattatgtttttactttctctctc 17367163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 21617229 - 21617269
Alignment:
Q  188 ctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||| ||| | ||||||||||||||||||||||||    
T  21617229 ctttctctctcatactcacattattttttactttatctctc 21617269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 30079892 - 30079932
Alignment:
Q  188 ctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||| ||| | ||||||||||||||||||||||||    
T  30079892 ctttctctctcatactcacattattttttactttatctctc 30079932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 227
Target Start/End: Complemental strand, 39312674 - 39312602
Alignment:
Q  156 agaaatgatatttgaacattaattt-gtgaccgctttctctcttatatttacattattttttactttatctct 227  Q
    |||||||||||||||||||  |||| |||||  |||||||||| ||| | |||||||||||||  ||||||||    
T  39312674 agaaatgatatttgaacatctatttagtgacaactttctctctcatactcacattattttttatattatctct 39312602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 225
Target Start/End: Original strand, 48335601 - 48335637
Alignment:
Q  189 tttctctcttatatttacattattttttactttatct 225  Q
    ||||||||| ||||| |||||||||||||||||||||    
T  48335601 tttctctctcatattcacattattttttactttatct 48335637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 227
Target Start/End: Complemental strand, 52846285 - 52846213
Alignment:
Q  156 agaaatgatatttgaacat-taatttgtgaccgctttctctcttatatttacattattttttactttatctct 227  Q
    ||||||||||||| ||||| || ||| ||||  |||||||||| ||| | |||||| ||||||||||||||||    
T  52846285 agaaatgatatttaaacatctattttatgacaactttctctctcatactcacattactttttactttatctct 52846213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 2051068 - 2051188
Alignment:
Q  1 atcaaaaattgggtaagggatattcttgtgaaacatatcagtcaacggtatctcaaactatctgtcacccacataaacaaaggtaaaccagacaccaaga 100  Q
    ||||||||  ||||| |||||||||||||||||| ||||||||||  |||| ||||||| || |||||||||| |||| ||||||| || | ||||||||    
T  2051068 atcaaaaaccgggtaggggatattcttgtgaaacctatcagtcaagtgtatatcaaactgtccgtcacccacaaaaaccaaggtaatccgggcaccaaga 2051167  T
Q  101 ccgattctgtaaaagtcacga 121  Q
     |||||| |||||||||||||    
T  2051168 tcgattccgtaaaagtcacga 2051188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 36870327 - 36870447
Alignment:
Q  1 atcaaaaattgggtaagggatattcttgtgaaacatatcagtcaacggtatctcaaactatctgtcacccacataaacaaaggtaaaccagacaccaaga 100  Q
    ||||||||  ||||| |||||||||||||||||| ||||||||||  |||| ||||||| || |||||||||| |||| ||||||| || | ||||||||    
T  36870327 atcaaaaaccgggtaggggatattcttgtgaaacctatcagtcaagtgtatatcaaactgtccgtcacccacaaaaaccaaggtaatccgggcaccaaga 36870426  T
Q  101 ccgattctgtaaaagtcacga 121  Q
     |||||| |||||||||||||    
T  36870427 tcgattccgtaaaagtcacga 36870447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 45506304 - 45506424
Alignment:
Q  1 atcaaaaattgggtaagggatattcttgtgaaacatatcagtcaacggtatctcaaactatctgtcacccacataaacaaaggtaaaccagacaccaaga 100  Q
    ||||||||  ||||| |||||| ||||||||||| ||||||||||| |||| ||||||| || |||||| ||| |||| |||||||  ||| ||||||||    
T  45506304 atcaaaaaccgggtaggggatactcttgtgaaacctatcagtcaactgtatatcaaactgtccgtcaccaacaaaaaccaaggtaattcaggcaccaaga 45506403  T
Q  101 ccgattctgtaaaagtcacga 121  Q
     |||||| |||||||||||||    
T  45506404 tcgattccgtaaaagtcacga 45506424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 48959424 - 48959304
Alignment:
Q  1 atcaaaaattgggtaagggatattcttgtgaaacatatcagtcaacggtatctcaaactatctgtcacccacataaacaaaggtaaaccagacaccaaga 100  Q
    ||||||||  ||||| |||||| ||||||||||| ||||||||||| |||| ||||||| || |||||| ||| |||| |||||||  ||| ||||||||    
T  48959424 atcaaaaaccgggtaggggatactcttgtgaaacctatcagtcaactgtatatcaaactgtccgtcaccaacaaaaaccaaggtaattcaggcaccaaga 48959325  T
Q  101 ccgattctgtaaaagtcacga 121  Q
     |||||| |||||||||||||    
T  48959324 tcgattccgtaaaagtcacga 48959304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 121
Target Start/End: Complemental strand, 26211052 - 26210942
Alignment:
Q  11 gggtaagggatattcttgtgaaacatatcagtcaacggtatctcaaactatctgtcacccacataaacaaaggtaaaccagacaccaagaccgattctgt 110  Q
    |||||||||||| ||||||||||| ||||||||||| |||| ||||||| || |||||||| | |||| ||| ||| ||||  |||||||||||||| ||    
T  26211052 gggtaagggatactcttgtgaaacctatcagtcaaccgtatatcaaactgtccgtcacccataaaaaccaagataatccaggtaccaagaccgattccgt 26210953  T
Q  111 aaaagtcacga 121  Q
    |||| ||||||    
T  26210952 aaaattcacga 26210942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 50882168 - 50882095
Alignment:
Q  156 agaaatgatatttgaacattaattt-gtgaccgctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||||||||||||| |||| |||||   ||||||||| ||||||||||||||||||||||||||||||    
T  50882168 agaaatgatatttgaacattcattttgtgacaattttctctctcatatttacattattttttactttatctctc 50882095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 18336159 - 18336232
Alignment:
Q  156 agaaatgatatttgaacattaattt-gtgaccgctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||||||||||||| |||| |||||  |||||||||| ||| | |||||| |||||||||||||||||    
T  18336159 agaaatgatatttgaacattcattttgtgacaactttctctctcatactcacattagtttttactttatctctc 18336232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 44632541 - 44632614
Alignment:
Q  156 agaaatgatatttgaacattaatttg-tgaccgctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||||||||||||  ||||| ||||  |||||||||| ||| | ||||||||||||||||||||||||    
T  44632541 agaaatgatatttgaacatccatttggtgacaactttctctctcatactcacattattttttactttatctctc 44632614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 48220202 - 48220129
Alignment:
Q  156 agaaatgatatttgaacattaattt-gtgaccgctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||||||||||||  |||| |||||  |||||||||| ||| | ||||||||||||||||||||||||    
T  48220202 agaaatgatatttgaacatccattttgtgacaactttctctctcatactcacattattttttactttatctctc 48220129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 13928496 - 13928564
Alignment:
Q  5 aaaattgggtaagggatattcttgtgaaacatatcagtcaacggtatctcaaactatctgtcacccaca 73  Q
    ||||| ||||| |||||| ||||||||||| ||||||||||| |||| ||||||| || ||||||||||    
T  13928496 aaaatcgggtaggggatactcttgtgaaacctatcagtcaactgtatatcaaactgtccgtcacccaca 13928564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 156 - 225
Target Start/End: Complemental strand, 49241563 - 49241493
Alignment:
Q  156 agaaatgatatttgaacattaa-tttgtgaccgctttctctcttatatttacattattttttactttatct 225  Q
    |||||||||||||||||||  | ||||||||  |||||||||| ||| | |||||||||||||||||||||    
T  49241563 agaaatgatatttgaacatccactttgtgacaactttctctctcatactcacattattttttactttatct 49241493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 224
Target Start/End: Original strand, 8200088 - 8200157
Alignment:
Q  156 agaaatgatatttgaacattaattt-gtgaccgctttctctcttatatttacattattttttactttatc 224  Q
    |||||||||||||||||||  |||| |||||  |||||||||| ||| | ||||||||||||||||||||    
T  8200088 agaaatgatatttgaacatccattttgtgacaactttctctctcatactcacattattttttactttatc 8200157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 35539394 - 35539345
Alignment:
Q  178 tttgtgaccgctttctctcttatatttacattattttttactttatctct 227  Q
    ||||||||  ||||| |||||||||| |||||||||||||||||||||||    
T  35539394 tttgtgacaactttcactcttatattcacattattttttactttatctct 35539345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 223
Target Start/End: Original strand, 6143696 - 6143764
Alignment:
Q  156 agaaatgatatttgaacattaa-tttgtgaccgctttctctcttatatttacattattttttactttat 223  Q
    ||||||||| |||||||||  | ||||||||  |||||||||| ||| |||||||||||||||||||||    
T  6143696 agaaatgatgtttgaacatccactttgtgacaactttctctctcatacttacattattttttactttat 6143764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 48624922 - 48624962
Alignment:
Q  188 ctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||||||| | ||||||||||||||||||||||||    
T  48624922 ctttctctcttatactcacattattttttactttatctctc 48624962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 228
Target Start/End: Original strand, 8447772 - 8447822
Alignment:
Q  178 tttgtgaccgctttctctcttatatttacattattttttactttatctctc 228  Q
    ||||||||  |||||||||||||| | |||| |||||||||||||||||||    
T  8447772 tttgtgacaactttctctcttatactcacatcattttttactttatctctc 8447822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 228
Target Start/End: Original strand, 15015434 - 15015484
Alignment:
Q  178 tttgtgaccgctttctctcttatatttacattattttttactttatctctc 228  Q
    ||||||||  |||||||||| ||| ||||||||||||||||||||| ||||    
T  15015434 tttgtgacaactttctctctcatacttacattattttttactttatatctc 15015484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 33358217 - 33358143
Alignment:
Q  156 agaaatgatatttgaacattaattt-gtgaccgctttctctcttatatttacattatt-ttttactttatctctc 228  Q
    |||||||||||||||||||  |||| |||||  |||||||||| ||| | |||||||| ||||||||||||||||    
T  33358217 agaaatgatatttgaacatccattttgtgacaactttctctctcatactcacattatttttttactttatctctc 33358143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 228
Target Start/End: Original strand, 47214244 - 47214294
Alignment:
Q  178 tttgtgaccgctttctctcttatatttacattattttttactttatctctc 228  Q
    ||||||||  |||||||||| ||| | ||||||||||||||||||||||||    
T  47214244 tttgtgacaactttctctctcatactcacattattttttactttatctctc 47214294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 228
Target Start/End: Original strand, 47721445 - 47721495
Alignment:
Q  178 tttgtgaccgctttctctcttatatttacattattttttactttatctctc 228  Q
    ||||||||  |||||| ||| ||||| ||||||||||||||||||||||||    
T  47721445 tttgtgacaactttctgtctcatattcacattattttttactttatctctc 47721495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 228
Target Start/End: Original strand, 47728437 - 47728487
Alignment:
Q  178 tttgtgaccgctttctctcttatatttacattattttttactttatctctc 228  Q
    ||||||||  |||||| ||| ||||| ||||||||||||||||||||||||    
T  47728437 tttgtgacaactttctgtctcatattcacattattttttactttatctctc 47728487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 228
Target Start/End: Original strand, 52362518 - 52362568
Alignment:
Q  178 tttgtgaccgctttctctcttatatttacattattttttactttatctctc 228  Q
    ||||||||  |||||||||| ||| | ||||||||||||||||||||||||    
T  52362518 tttgtgacaactttctctctcatactcacattattttttactttatctctc 52362568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 19969620 - 19969547
Alignment:
Q  156 agaaatgatatttgaacattaatttg-tgaccgctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||||||||||||  ||||  ||||  |||||||||| ||| | |||||| |||||||||||||||||    
T  19969620 agaaatgatatttgaacatccattttatgacaactttctctctcatactcacattactttttactttatctctc 19969547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 38713606 - 38713655
Alignment:
Q  178 tttgtgaccgctttctctcttatatttacattattttttactttatctct 227  Q
    ||||||||  |||||||||| ||||| | |||||||||||||||||||||    
T  38713606 tttgtgacaactttctctctcatattcatattattttttactttatctct 38713655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 50781628 - 50781555
Alignment:
Q  156 agaaatgatatttgaacattaatttg-tgaccgctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||||||||||||  ||||  ||||  |||||||||| ||| | |||||| |||||||||||||||||    
T  50781628 agaaatgatatttgaacatccattttatgacaactttctctctcatactcacattactttttactttatctctc 50781555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 8411743 - 8411703
Alignment:
Q  188 ctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||| ||| | ||||||||||||||||||||||||    
T  8411743 ctttctctctcatactcacattattttttactttatctctc 8411703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 9008271 - 9008311
Alignment:
Q  188 ctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||| ||| | ||||||||||||||||||||||||    
T  9008271 ctttctctctcatactcacattattttttactttatctctc 9008311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 21486342 - 21486302
Alignment:
Q  188 ctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||| ||| | ||||||||||||||||||||||||    
T  21486342 ctttctctctcatactcacattattttttactttatctctc 21486302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 33054113 - 33054073
Alignment:
Q  188 ctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||| ||| | ||||||||||||||||||||||||    
T  33054113 ctttctctctcatactcacattattttttactttatctctc 33054073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 34040525 - 34040485
Alignment:
Q  188 ctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||| ||| | ||||||||||||||||||||||||    
T  34040525 ctttctctctcatactcacattattttttactttatctctc 34040485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 50433815 - 50433855
Alignment:
Q  188 ctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||||||| | |||| |||||||||||||||||||    
T  50433815 ctttctctcttatactcacataattttttactttatctctc 50433855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 18489438 - 18489558
Alignment:
Q  1 atcaaaaattgggtaagggatattcttgtgaaacatatcagtcaacggtatctcaaactatctgtcacccacataaacaaaggtaaaccagacaccaaga 100  Q
    ||||||||  ||||| |||||| ||||||||||| ||| |||||||||||| ||||||| || |||||||||| |||| ||||||| |||   |||||||    
T  18489438 atcaaaaaccgggtaggggatactcttgtgaaacctattagtcaacggtatatcaaactgtcagtcacccacaaaaaccaaggtaatccaagaaccaaga 18489537  T
Q  101 ccgattctgtaaaagtcacga 121  Q
    |||||||  ||||||||||||    
T  18489538 ccgattccataaaagtcacga 18489558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 12 - 121
Target Start/End: Original strand, 409401 - 409510
Alignment:
Q  12 ggtaagggatattcttgtgaaacatatcagtcaacggtatctcaaactatctgtcacccacataaacaaaggtaaaccagacaccaagaccgattctgta 111  Q
    |||| |||||| ||||||||||| ||||||||||  |||| ||||||| || |||||||||| |||| |||||||  ||| |||||||| |||||| |||    
T  409401 ggtaggggatactcttgtgaaacctatcagtcaagtgtatatcaaactgtccgtcacccacaaaaaccaaggtaattcaggcaccaagatcgattccgta 409500  T
Q  112 aaagtcacga 121  Q
    ||||||||||    
T  409501 aaagtcacga 409510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 30439564 - 30439491
Alignment:
Q  156 agaaatgatatttgaacattaattt-gtgaccgctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||||||||||||  |||| |||||  |||||||||| ||| | ||||||||||||||||||||||||    
T  30439564 agaaatgatatttgaacatccattttgtgacaactttctctctcatactcacattattttttactttatctctc 30439491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 41541870 - 41541943
Alignment:
Q  156 agaaatgatatttgaacattaattt-gtgaccgctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||||||||||||  |||| |||||  |||||||||||||| | ||||||||||||| ||||||||||    
T  41541870 agaaatgatatttgaacatccattttgtgacaactttctctcttatactcacattattttttattttatctctc 41541943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 227
Target Start/End: Complemental strand, 42569787 - 42569715
Alignment:
Q  156 agaaatgatatttgaacattaatttg-tgaccgctttctctcttatatttacattattttttactttatctct 227  Q
    |||||||||||||||||||| ||||  ||||  |||||||||| ||||| |||||| ||||||||||||||||    
T  42569787 agaaatgatatttgaacattcattttatgacaactttctctctcatattcacattactttttactttatctct 42569715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 228
Target Start/End: Complemental strand, 41159924 - 41159874
Alignment:
Q  178 tttgtgaccgctttctctcttatatttacattattttttactttatctctc 228  Q
    ||||||||  |||||||||| ||| | ||||||||||||||||||||||||    
T  41159924 tttgtgacaactttctctctcatactcacattattttttactttatctctc 41159874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 7586220 - 7586147
Alignment:
Q  156 agaaatgatatttgaacattaatttg-tgaccgctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||||||||||||  ||||| ||||  |||||| | | ||| | ||||||||||||||||||||||||    
T  7586220 agaaatgatatttgaacatctatttggtgacaactttctttttcatactcacattattttttactttatctctc 7586147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 1633915 - 1633875
Alignment:
Q  188 ctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||| ||| | ||||||||||||||||||||||||    
T  1633915 ctttctctctcatactcacattattttttactttatctctc 1633875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 11017851 - 11017891
Alignment:
Q  188 ctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||| ||| | ||||||||||||||||||||||||    
T  11017851 ctttctctctcatactcacattattttttactttatctctc 11017891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 29028986 - 29028946
Alignment:
Q  188 ctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||||||| | ||||||||||||| ||||||||||    
T  29028986 ctttctctcttatactcacattattttttaatttatctctc 29028946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 34718161 - 34718201
Alignment:
Q  188 ctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||| ||| | ||||||||||||||||||||||||    
T  34718161 ctttctctctcatactcacattattttttactttatctctc 34718201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 45529271 - 45529231
Alignment:
Q  188 ctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||| ||| | ||||||||||||||||||||||||    
T  45529271 ctttctctctcatactcacattattttttactttatctctc 45529231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0374 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0374
Description:

Target: scaffold0374; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 1019 - 899
Alignment:
Q  1 atcaaaaattgggtaagggatattcttgtgaaacatatcagtcaacggtatctcaaactatctgtcacccacataaacaaaggtaaaccagacaccaaga 100  Q
    |||||||| |||||| |||||| |||| |||||| |||||||||   |||| ||||| | ||  |||||  || |||| ||||||| |||| ||||||||    
T  1019 atcaaaaactgggtaggggatactcttatgaaacctatcagtcagtcgtatatcaaattgtccctcaccatcaaaaaccaaggtaatccaggcaccaaga 920  T
Q  101 ccgattctgtaaaagtcacga 121  Q
    |||||||||||||||||||||    
T  919 ccgattctgtaaaagtcacga 899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 2 - 118
Target Start/End: Complemental strand, 10039062 - 10038946
Alignment:
Q  2 tcaaaaattgggtaagggatattcttgtgaaacatatcagtcaacggtatctcaaactatctgtcacccacataaacaaaggtaaaccagacaccaagac 101  Q
    |||||||  ||||| |||||| ||||||||||| |||||||||||  ||| ||||||| || |||| | ||| |||| ||||||| |||| ||||||||     
T  10039062 tcaaaaaccgggtaggggatactcttgtgaaacctatcagtcaactatatatcaaactgtccgtcatcaacaaaaaccaaggtaatccaggcaccaagat 10038963  T
Q  102 cgattctgtaaaagtca 118  Q
    |||||| ||||||||||    
T  10038962 cgattccgtaaaagtca 10038946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 30640836 - 30640876
Alignment:
Q  188 ctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  30640836 ctttctctctcatatttacattattttttactttatctctc 30640876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 156 - 225
Target Start/End: Complemental strand, 3640255 - 3640185
Alignment:
Q  156 agaaatgatatttgaacat-taatttgtgaccgctttctctcttatatttacattattttttactttatct 225  Q
    ||||||||||||||||||| || |||| |||  |||||||||| ||| | |||||||||||||||||||||    
T  3640255 agaaatgatatttgaacatctattttgagacaactttctctctcatactcacattattttttactttatct 3640185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 15953103 - 15953030
Alignment:
Q  156 agaaatgatatttgaacat-taatttgtgaccgctttctctcttatatttacattattttttactttatctctc 228  Q
    ||||||||||||||||||| || ||||||||  |||| ||||| ||| | | ||||||||||||||||||||||    
T  15953103 agaaatgatatttgaacatctattttgtgacaactttttctctcatactcatattattttttactttatctctc 15953030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 121
Target Start/End: Original strand, 20108395 - 20108452
Alignment:
Q  64 gtcacccacataaacaaaggtaaaccagacaccaagaccgattctgtaaaagtcacga 121  Q
    |||||||||| |||| ||||||| |||| |||||||| |||||| |||||||||||||    
T  20108395 gtcacccacaaaaaccaaggtaatccaggcaccaagatcgattccgtaaaagtcacga 20108452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 225
Target Start/End: Complemental strand, 1839401 - 1839333
Alignment:
Q  158 aaatgatatttgaacattaattt-gtgaccgctttctctcttatatttacattattttttactttatct 225  Q
    |||||||||||||||||  |||| |||||  |||||||||| ||| | |||||||||||||||||||||    
T  1839401 aaatgatatttgaacatccattttgtgacaactttctctctcatactcacattattttttactttatct 1839333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 2689011 - 2688971
Alignment:
Q  188 ctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||| | ||||||||||||||||||||||||||||||    
T  2689011 ctttctctttcatatttacattattttttactttatctctc 2688971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 6292167 - 6292207
Alignment:
Q  188 ctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||||||| | ||||||||||||||||||||||||    
T  6292167 ctttctctcttatactcacattattttttactttatctctc 6292207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 228
Target Start/End: Original strand, 20770167 - 20770217
Alignment:
Q  178 tttgtgaccgctttctctcttatatttacattattttttactttatctctc 228  Q
    ||||||||  |||||||||| ||| | ||||||||||||||||||||||||    
T  20770167 tttgtgacaactttctctctcatactcacattattttttactttatctctc 20770217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 227
Target Start/End: Complemental strand, 25585255 - 25585217
Alignment:
Q  189 tttctctcttatatttacattattttttactttatctct 227  Q
    ||||||||||||| | |||||||||||||||||||||||    
T  25585255 tttctctcttatactgacattattttttactttatctct 25585217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 228
Target Start/End: Complemental strand, 41175741 - 41175691
Alignment:
Q  178 tttgtgaccgctttctctcttatatttacattattttttactttatctctc 228  Q
    ||||||||  |||||||||| ||| | ||||||||||||||||||||||||    
T  41175741 tttgtgacaactttctctctcatactcacattattttttactttatctctc 41175691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 34270340 - 34270413
Alignment:
Q  156 agaaatgatatttgaacattaa-tttgtgaccgctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||||||||||||  | ||||||||   ||||||||| ||| |  |||||||||||||||||||||||    
T  34270340 agaaatgatatttgaacatccactttgtgacaattttctctctcatactcccattattttttactttatctctc 34270413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 8267845 - 8267805
Alignment:
Q  188 ctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||| ||| | ||||||||||||||||||||||||    
T  8267845 ctttctctctcatactcacattattttttactttatctctc 8267805  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 15267830 - 15267870
Alignment:
Q  188 ctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||| ||||| | ||||||||||||||||||||||    
T  15267830 ctttctctctcatattcatattattttttactttatctctc 15267870  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 18842346 - 18842306
Alignment:
Q  188 ctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||| ||| | ||||||||||||||||||||||||    
T  18842346 ctttctctctcatactcacattattttttactttatctctc 18842306  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 35099030 - 35098990
Alignment:
Q  188 ctttctctcttatatttacattattttttactttatctctc 228  Q
    |||||||||| ||| | ||||||||||||||||||||||||    
T  35099030 ctttctctctcatactcacattattttttactttatctctc 35098990  T

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Target: scaffold0532 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 228
Target Start/End: Original strand, 11000 - 11050
Alignment:
Q  178 tttgtgaccgctttctctcttatatttacattattttttactttatctctc 228  Q
    ||||||||  |||||||||| ||| | ||||||||||||||||||||||||    
T  11000 tttgtgacaactttctctctcatactcacattattttttactttatctctc 11050  T

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Target: scaffold0204 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 225
Target Start/End: Original strand, 23123 - 23159
Alignment:
Q  189 tttctctcttatatttacattattttttactttatct 225  Q
    ||||||||| ||||| |||||||||||||||||||||    
T  23123 tttctctctcatattcacattattttttactttatct 23159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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