View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10174_low_89 (Length: 225)
Name: NF10174_low_89
Description: NF10174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10174_low_89 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 3030349 - 3030557
Alignment:
| Q |
1 |
gtttaaggagacaagacatccagtgtaccgaggagtacgaagaaggaacaataacaagtgggtttgtgagatgagagttcctaatattaacgttaacaaa |
100 |
Q |
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| T |
3030349 |
gtttaaggagacaagacatccagtgtaccgaggagtacgaagaaggaacaataacaagtgggtttgtgagatgagagttcctaatattaacgttaacaaa |
3030448 |
T |
|
| Q |
101 |
aacaataagtcaaggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgatgttgctgcacttactcttaaaggaaaatcagctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3030449 |
aacaataagtcaaggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgatgttgctgcacttactcttaaaggaaaatcagctt |
3030548 |
T |
|
| Q |
201 |
gtcttaatt |
209 |
Q |
| |
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||||||||| |
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| T |
3030549 |
gtcttaatt |
3030557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 5 - 209
Target Start/End: Original strand, 3021139 - 3021343
Alignment:
| Q |
5 |
aaggagacaagacatccagtgtaccgaggagtacgaagaaggaacaataacaagtgggtttgtgagatgagagttcctaatattaacgttaacaaaaaca |
104 |
Q |
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|
||||||||||||||||| |||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||| | || |||||||||||| | |
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| T |
3021139 |
aaggagacaagacatccggtgtaccgaggagtacgacgtaggaagaataacaagtgggtttgtgagatgagagttcctaacaatatcgttaacaaaaata |
3021238 |
T |
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| Q |
105 |
ataagtcaaggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgatgttgctgcacttactcttaaaggaaaatcagcttgtct |
204 |
Q |
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|
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| T |
3021239 |
ataagtcaaggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgatgttgctgcacttactcttaaaggaaaatcagcttgtct |
3021338 |
T |
|
| Q |
205 |
taatt |
209 |
Q |
| |
|
||||| |
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|
| T |
3021339 |
taatt |
3021343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 5 - 209
Target Start/End: Original strand, 3038008 - 3038212
Alignment:
| Q |
5 |
aaggagacaagacatccagtgtaccgaggagtacgaagaaggaacaataacaagtgggtttgtgagatgagagttcctaatattaacgttaacaaaaaca |
104 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||| | || |||||||||||| | |
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| T |
3038008 |
aaggagacaagacatccggtgtaccgaggagtacgacgtaggaagaataacaagtgggtttgtgagatgagagttcctaacaatatcgttaacaaaaata |
3038107 |
T |
|
| Q |
105 |
ataagtcaaggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgatgttgctgcacttactcttaaaggaaaatcagcttgtct |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3038108 |
ataagtcaaggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgatgttgctgcacttactcttaaaggaaaatcagcttgtct |
3038207 |
T |
|
| Q |
205 |
taatt |
209 |
Q |
| |
|
||||| |
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|
| T |
3038208 |
taatt |
3038212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 113 - 209
Target Start/End: Complemental strand, 42553805 - 42553709
Alignment:
| Q |
113 |
aggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgatgttgctgcacttactcttaaaggaaaatcagcttgtcttaatt |
209 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||| ||||||||||| || ||||| ||||| | ||| || ||||||||||||||||||| |
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| T |
42553805 |
aggatttggcttggaacatatccaacacctgagatggcagcacgtgcacacgacgttgccgcactggcacttcgcggtaaatcagcttgtcttaatt |
42553709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 42553904 - 42553852
Alignment:
| Q |
5 |
aaggagacaagacatccagtgtaccgaggagtacgaagaaggaacaataacaa |
57 |
Q |
| |
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|||||||||||||||||||| ||| |||||||||||||||||||||| ||||| |
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| T |
42553904 |
aaggagacaagacatccagtatacagaggagtacgaagaaggaacaacaacaa |
42553852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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